BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0704700 Os06g0704700|AK120907
         (648 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0704700  NmrA-like family protein                           1040   0.0  
Os02g0234500  NAD-dependent epimerase/dehydratase family pro...   115   1e-25
Os02g0137700  Conserved hypothetical protein                       74   2e-13

>Os06g0704700 NmrA-like family protein
          Length = 648

 Score = 1040 bits (2688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/626 (83%), Positives = 523/626 (83%)

Query: 23  YHHCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCFAAKPTQVAAEVDQGGAAEPGVA 82
           YHHC                               CCFAAKPTQVAAEVDQGGAAEPGVA
Sbjct: 23  YHHCASPSRALPLAAGPSAGGGVVVGRRYHHHGGACCFAAKPTQVAAEVDQGGAAEPGVA 82

Query: 83  SANAAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 142
           SANAAVE                                                     
Sbjct: 83  SANAAVEAKPRKKARSRRGRKGKRSSSSETRTTAVLEEEEEVEVKEKKTEEDGEEGKRKE 142

Query: 143 XXXXXDLDEVMAVSPVGLGRRSRQIFDEVWRKFSRLGQMXXXXXXXXXXXXXXVLIRGGP 202
                DLDEVMAVSPVGLGRRSRQIFDEVWRKFSRLGQM              VLIRGGP
Sbjct: 143 KAAGLDLDEVMAVSPVGLGRRSRQIFDEVWRKFSRLGQMSSASSTALAEEEQAVLIRGGP 202

Query: 203 MCEFTVPGAQDTTVLVVGATSRIGRIVVRKLMLRGYNVKALVRRNDAEVIDMLPRSVDIV 262
           MCEFTVPGAQDTTVLVVGATSRIGRIVVRKLMLRGYNVKALVRRNDAEVIDMLPRSVDIV
Sbjct: 203 MCEFTVPGAQDTTVLVVGATSRIGRIVVRKLMLRGYNVKALVRRNDAEVIDMLPRSVDIV 262

Query: 263 VGDVGDPSTVKSAVSGCSKIIYCATARSTITGDLNRVDNQGVRNVSKAFQDYYNELAQLR 322
           VGDVGDPSTVKSAVSGCSKIIYCATARSTITGDLNRVDNQGVRNVSKAFQDYYNELAQLR
Sbjct: 263 VGDVGDPSTVKSAVSGCSKIIYCATARSTITGDLNRVDNQGVRNVSKAFQDYYNELAQLR 322

Query: 323 AGKSSKSKLLIAKFKSPKSLNGWEVDQGSYFPNTFASRFDEGIDASFDFSEAGQAVFSGF 382
           AGKSSKSKLLIAKFKSPKSLNGWEVDQGSYFPNTFASRFDEGIDASFDFSEAGQAVFSGF
Sbjct: 323 AGKSSKSKLLIAKFKSPKSLNGWEVDQGSYFPNTFASRFDEGIDASFDFSEAGQAVFSGF 382

Query: 383 VFTRGGYVEISKRLSLPLGSTLDRYDGLLFSVGGNGRSYVVILETGPLADTSQSKKYFAR 442
           VFTRGGYVEISKRLSLPLGSTLDRYDGLLFSVGGNGRSYVVILETGPLADTSQSKKYFAR
Sbjct: 383 VFTRGGYVEISKRLSLPLGSTLDRYDGLLFSVGGNGRSYVVILETGPLADTSQSKKYFAR 442

Query: 443 MTTKVGFCRVRVPFSAFRPVNPQDPPLDPFLVHTLTIRFEPKRQRPGDGSQSATDPRNFE 502
           MTTKVGFCRVRVPFSAFRPVNPQDPPLDPFLVHTLTIRFEPKRQRPGDGSQSATDPRNFE
Sbjct: 443 MTTKVGFCRVRVPFSAFRPVNPQDPPLDPFLVHTLTIRFEPKRQRPGDGSQSATDPRNFE 502

Query: 503 LILEYIKALPTGQETDFILVSCSGSGIEPNRREQVLKAKKAGEDALRRSGLGYTIVRPGP 562
           LILEYIKALPTGQETDFILVSCSGSGIEPNRREQVLKAKKAGEDALRRSGLGYTIVRPGP
Sbjct: 503 LILEYIKALPTGQETDFILVSCSGSGIEPNRREQVLKAKKAGEDALRRSGLGYTIVRPGP 562

Query: 563 LQEEPGGQRALIFDQGNRISQGISCADVADICVKALHDSTARNKSFDVCYEYVAKQGNEL 622
           LQEEPGGQRALIFDQGNRISQGISCADVADICVKALHDSTARNKSFDVCYEYVAKQGNEL
Sbjct: 563 LQEEPGGQRALIFDQGNRISQGISCADVADICVKALHDSTARNKSFDVCYEYVAKQGNEL 622

Query: 623 YELVAHLPDKANNYLTPALSVLEKNT 648
           YELVAHLPDKANNYLTPALSVLEKNT
Sbjct: 623 YELVAHLPDKANNYLTPALSVLEKNT 648



>Os02g0234500 NAD-dependent epimerase/dehydratase family protein
          Length = 587

 Score =  115 bits (288), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 140/446 (31%), Positives = 205/446 (45%), Gaps = 72/446 (16%)

Query: 216 VLVVGATSRIGRIVVRKLMLRGYNVKALVRRNDAEVIDMLPRSVDIVVGDVGDPSTVKSA 275
           VLV GAT  +GR VV  L  +G  V+ L R N+ +   ML   VD+++GDV   +++   
Sbjct: 116 VLVTGATGGVGRRVVDILRNKGIPVRVLAR-NEEKARSMLGPDVDLIIGDVTKENSLDPK 174

Query: 276 -VSGCSKIIYCATARSTITG--DLNRVDNQGVRNVSKAFQ-----------DYYNELAQL 321
              G  K++    A S I G  + +  D Q  +   K F+           +Y      +
Sbjct: 175 YFKGIKKVV---NAVSVIVGPKEGDTPDRQKYKQGIKFFEPEIKGPSPEMVEYLGMQNLI 231

Query: 322 RAGKSS----KSKLLIAKFKSPKSLNG---W----EVDQGSYFPNTFASRFDEGIDASFD 370
            A K+S    + KLL   F    +L+G   W    +V  G    +TF       I  +  
Sbjct: 232 NAVKNSVGLTEGKLL---FGGTGNLSGKIVWGALDDVVMGGVSESTFQ------IQPTGS 282

Query: 371 FSEAGQAVFSGFVFT--RGGYVEI-SKRLSLPLGSTLDRYDGLLFSVGGNGRSYVVILET 427
            ++    +F G V T   GG+  I +K  ++P    L  YDG+   V G+GR Y +I+ T
Sbjct: 283 ETDGPTGLFKGTVSTSNNGGFTSIRTKNFTVP--EDLSAYDGIELRVKGDGRRYKLIVRT 340

Query: 428 GPLADTSQSKKYFARM-TTKVGFCRVRVPFSAFRPV-----NPQDPPLDPFLVHTLTIRF 481
               DT     Y A   TTK  +  V++PFS+  PV      P   P D   V +L + F
Sbjct: 341 SFEWDTV---GYIASFDTTKGEWQSVKLPFSSLNPVFRARTMPDAAPFDASNVTSLQLMF 397

Query: 482 EPKRQRPGDGSQSATDPRNFELILEYIKALPTGQETD-FILVSCSG------SGIEPNRR 534
             K +  G  + + T+  +FEL    I+A      T  F+ VS +G       G++ +++
Sbjct: 398 S-KFEYDGKLNPTFTE-GSFELPFSSIRAYINEPITPRFVHVSSAGVTRPERPGLDLSKQ 455

Query: 535 E----------QVLKAKKAGEDALRRSGLGYTIVRPGPLQEEPGGQRALIFDQGNRISQG 584
                       +L  K  GED +R SG+ YTIVRP  L EEP G   LIFDQG+ I+  
Sbjct: 456 PPAVRMNKELGSILTYKLKGEDLIRESGIPYTIVRPCALTEEPAGAD-LIFDQGDNITGK 514

Query: 585 ISCADVADICVKALHDSTARNKSFDV 610
           IS  ++A ICV AL    A  K+F+V
Sbjct: 515 ISREEIAFICVAALASPNAVEKTFEV 540



>Os02g0137700 Conserved hypothetical protein
          Length = 46

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/36 (91%), Positives = 35/36 (97%)

Query: 451 RVRVPFSAFRPVNPQDPPLDPFLVHTLTIRFEPKRQ 486
           +VRVPFS FRPVNPQDPPLDPFLVHTLTIRFEPK+Q
Sbjct: 7   QVRVPFSDFRPVNPQDPPLDPFLVHTLTIRFEPKKQ 42



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,843,074
Number of extensions: 729324
Number of successful extensions: 1587
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1586
Number of HSP's successfully gapped: 4
Length of query: 648
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 541
Effective length of database: 11,448,903
Effective search space: 6193856523
Effective search space used: 6193856523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)