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Os06g0704700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : NmrA-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.9 (0.0228) R2 : 0.909
β1 : -0.802 (0.0835) R2dD : 0.0189 R2D : 0.0146
β2 : 4.36 (0.0673) R2dC : 1.1 R2C : 0.339
β3 : 2.69 (0.0598) R2dE : 0.529 R2E : -0.205
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.425 (0.0487) R2dN8 : 0.0203 R2N8 : 0.00228
σ : 0.426
deviance : 83.73
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_____
C
peak time of C : 7.37
E
wheather : radiation
threshold : 0.17
memory length : 92
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 9.47
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.78 0.414 12.9 -0.818 4.35 2.66 1.12 -0.419 -0.418 7.36 0.1948 93 9.43 --
78.26 0.412 12.9 -0.831 4.35 2.66 1.41 -- -0.418 7.37 0.1704 92 9.41 --
79.94 0.416 12.9 -0.763 4.36 2.67 -- -0.882 -0.438 7.39 0.17 89 9.33 --
83.73 0.426 12.9 -0.802 4.36 2.69 -- -- -0.425 7.37 0.17 92 9.47 --
163.18 0.595 13.1 -1.09 -- 4.38 -- -0.435 -0.647 -- 5.878 756 8.15 --
167.34 0.606 13 -0.985 3.71 -- 1.16 -- -0.518 5.03 -- -- -- --
170.73 0.612 13 -0.988 3.72 -- -- -- -0.524 5.01 -- -- -- --
154.23 0.578 13 -0.918 -- 4.7 -- -- -0.43 -- 5.496 830 9.21 --
100.41 0.467 12.9 -- 4.41 2.79 -- -- -0.334 7.42 0.17 92 9.56 --
896.65 1.4 13 -0.853 -- -- -- -- -0.429 -- -- -- -- --
196.44 0.656 12.9 -- 3.7 -- -- -- -0.414 5.01 -- -- -- --
167.45 0.603 13 -- -- 5 -- -- -0.351 -- 1.11 840 9.97 --
915.83 1.41 13 -- -- -- -- -- -0.334 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 68.82 temperature 20.0 270 > th dose independent rect. 12 5
2 69.44 wind 9.0 270 < th dose independent rect. 12 5
3 69.64 atmosphere 1010.0 270 < th dose independent rect. 12 5
4 70.15 temperature 10.0 270 > th dose independent rect. 12 5
7 70.15 temperature 10.0 270 > th dose independent rect. 17 19
8 70.20 precipitation 0.1 270 < th dose independent rect. 12 5
9 70.20 precipitation 0.1 270 < th dose dependent rect. 12 5
10 70.61 precipitation 0.1 270 < th dose independent rect. 17 19
11 70.61 precipitation 0.1 270 < th dose dependent rect. 17 19
12 70.73 radiation 1.0 270 > th dose independent rect. 12 5
13 70.89 wind 1.0 270 > th dose independent rect. 12 5
14 70.91 temperature 10.0 270 > th dose dependent rect. 12 5
15 71.37 wind 9.0 270 < th dose independent rect. 17 19
17 72.19 atmosphere 995.0 270 > th dose independent rect. 12 5
19 72.32 atmosphere 995.0 270 > th dose independent rect. 17 19
21 72.82 humidity 90.0 270 < th dose independent rect. 12 5
27 74.53 humidity 50.0 270 > th dose independent rect. 17 19
71 76.19 temperature 10.0 270 > th dose dependent rect. 13 3
99 77.18 wind 1.0 270 > th dose independent rect. 13 3
102 77.32 atmosphere 995.0 270 > th dose independent rect. 13 3
143 79.69 temperature 10.0 270 > th dose independent rect. 22 9
144 79.69 temperature 30.0 270 < th dose independent rect. 22 9
145 79.69 humidity 50.0 270 > th dose independent rect. 22 9
147 79.69 atmosphere 995.0 270 > th dose independent rect. 22 9
148 79.69 radiation 40.0 270 < th dose independent rect. 22 9
149 79.69 temperature 10.0 270 > th dose independent rect. 7 15
152 79.72 wind 9.0 270 < th dose independent rect. 22 9
165 79.80 temperature 30.0 270 < th dose independent rect. 17 18
172 80.34 wind 9.0 270 < th dose independent rect. 12 17
173 80.40 radiation 40.0 270 < th dose dependent rect. 16 9
174 80.44 radiation 1.0 90 < th dose dependent sin 15 NA
180 80.90 temperature 10.0 270 > th dose independent rect. 5 7
181 80.90 atmosphere 995.0 270 > th dose independent rect. 5 7
182 80.90 atmosphere 1015.0 270 < th dose independent rect. 5 7
183 80.90 temperature 10.0 270 > th dose independent rect. 12 17
184 81.04 precipitation 0.1 270 < th dose independent rect. 5 7
185 81.04 precipitation 0.1 270 < th dose dependent rect. 5 7
189 81.12 radiation 20.0 270 < th dose independent rect. 16 9
191 81.31 temperature 15.0 270 > th dose independent rect. 1 16
192 81.35 precipitation 0.1 270 < th dose independent rect. 22 9
193 81.35 precipitation 0.1 270 < th dose dependent rect. 22 9
198 81.50 radiation 40.0 270 < th dose dependent rect. 22 9
210 81.85 wind 9.0 270 < th dose independent rect. 1 16
211 81.86 wind 9.0 270 < th dose independent rect. 5 7
219 82.51 precipitation 0.1 270 < th dose independent rect. 7 15
220 82.51 precipitation 0.1 270 < th dose dependent rect. 7 15
225 82.66 wind 1.0 270 > th dose independent rect. 17 19
244 83.27 radiation 1.0 90 < th dose dependent rect. 17 8
246 83.29 temperature 10.0 270 > th dose independent rect. 17 8
251 83.29 atmosphere 1015.0 270 < th dose independent rect. 1 16
259 83.37 humidity 50.0 270 > th dose independent rect. 17 8
260 83.49 precipitation 0.1 270 < th dose independent rect. 12 17
261 83.49 precipitation 0.1 270 < th dose dependent rect. 12 17
262 83.50 wind 9.0 270 < th dose independent rect. 7 15
272 83.83 radiation 40.0 270 < th dose independent rect. 18 17
277 83.96 wind 9.0 270 < th dose independent rect. 17 8
280 84.09 radiation 40.0 90 < th dose independent rect. 13 6
291 84.28 radiation 1.0 90 < th dose independent sin 15 NA
299 84.48 humidity 50.0 270 > th dose dependent rect. 22 9
302 84.52 wind 1.0 270 > th dose independent rect. 17 8
305 84.59 humidity 50.0 270 > th dose independent rect. 17 6
308 84.61 precipitation 0.1 270 < th dose independent rect. 1 16
310 84.61 precipitation 0.1 270 < th dose dependent rect. 1 16
318 84.80 temperature 10.0 270 > th dose dependent rect. 1 16
346 85.33 radiation 40.0 270 < th dose dependent rect. 17 6
349 85.38 wind 1.0 270 > th dose independent rect. 5 7
357 85.48 radiation 1.0 270 > th dose independent rect. 4 8
377 85.60 atmosphere 995.0 270 > th dose independent rect. 1 16
381 85.73 atmosphere 1015.0 270 < th dose independent rect. 17 19
383 85.75 precipitation 0.1 270 < th dose independent rect. 17 8
385 85.75 precipitation 0.1 270 < th dose dependent rect. 17 8
394 86.04 atmosphere 995.0 270 > th dose independent rect. 12 17
403 86.26 atmosphere 1015.0 270 < th dose independent rect. 7 15
404 86.27 humidity 50.0 270 > th dose independent rect. 5 7
421 86.50 temperature 30.0 90 < th dose independent rect. 18 7
429 86.59 atmosphere 995.0 270 > th dose independent rect. 17 8
432 86.65 precipitation 0.1 270 < th dose independent rect. 17 6
433 86.65 precipitation 0.1 270 < th dose dependent rect. 17 6
450 86.89 wind 1.0 90 > th dose dependent rect. 13 6
453 86.93 radiation 1.0 270 < th dose independent sin 18 NA
502 87.55 atmosphere 995.0 270 > th dose independent rect. 17 6
503 87.56 atmosphere 1015.0 270 < th dose independent rect. 22 9
527 87.84 radiation 1.0 270 > th dose independent rect. 10 21
567 88.45 humidity 50.0 270 > th dose independent rect. 13 3
570 88.45 wind 9.0 270 < th dose independent rect. 11 20
589 88.61 radiation 1.0 270 > th dose independent sin 19 NA
609 88.84 wind 9.0 10 < th dose independent rect. 14 5
628 89.00 radiation 1.0 90 > th dose independent sin 15 NA
648 89.31 radiation 1.0 270 < th dose dependent sin 19 NA
669 89.37 temperature 10.0 270 > th dose independent rect. 7 4
670 89.37 atmosphere 995.0 270 > th dose independent rect. 7 4
671 89.37 atmosphere 1015.0 270 < th dose independent rect. 7 4
672 89.37 temperature 10.0 270 > th dose independent rect. 11 20
683 89.53 precipitation 0.1 10 < th dose independent rect. 14 5
684 89.53 precipitation 0.1 10 < th dose dependent rect. 14 5
688 89.57 precipitation 0.1 270 < th dose independent rect. 7 4
689 89.57 precipitation 0.1 270 < th dose dependent rect. 7 4
696 89.66 wind 9.0 270 < th dose independent rect. 7 4
770 90.51 humidity 50.0 270 > th dose independent rect. 7 4
811 90.68 temperature 30.0 270 < th dose independent rect. 6 6
853 91.02 temperature 10.0 270 > th dose dependent rect. 12 18
898 91.45 radiation 40.0 270 < th dose dependent sin 15 NA
913 91.58 temperature 10.0 1440 > th dose independent rect. 14 6
916 91.58 temperature 10.0 1440 > th dose independent rect. 20 18
919 91.58 atmosphere 995.0 1440 > th dose independent rect. 20 18
933 91.74 wind 9.0 270 < th dose dependent rect. 12 5
995 92.38 wind 1.0 270 > th dose dependent rect. 13 3