BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0704700 Os06g0704700|AK120907
(648 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G16720.1 | chr1:5723161-5726248 FORWARD LENGTH=599 824 0.0
AT4G18810.2 | chr4:10322263-10325735 REVERSE LENGTH=628 109 4e-24
AT4G31530.2 | chr4:15282281-15284064 FORWARD LENGTH=339 56 6e-08
AT2G37660.1 | chr2:15795481-15796977 REVERSE LENGTH=326 54 4e-07
AT4G35250.1 | chr4:16771401-16773269 REVERSE LENGTH=396 53 4e-07
AT4G33360.1 | chr4:16067989-16069374 REVERSE LENGTH=345 53 5e-07
AT5G02240.1 | chr5:451502-452984 FORWARD LENGTH=254 52 8e-07
>AT1G16720.1 | chr1:5723161-5726248 FORWARD LENGTH=599
Length = 598
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/495 (80%), Positives = 439/495 (88%), Gaps = 1/495 (0%)
Query: 155 VSPVGLGRRSRQIFDEVWRKFSRLGQMXXXXXXXXXXXXXXVLIRGGPMCEFTVPGAQDT 214
V+PVGLGRRSRQIFDEVWRKFS LGQM +LIR GPMCEF VPGAQ+
Sbjct: 104 VNPVGLGRRSRQIFDEVWRKFSGLGQMSRTTRPDEQETLDSLLIREGPMCEFAVPGAQNV 163
Query: 215 TVLVVGATSRIGRIVVRKLMLRGYNVKALVRRNDAEVIDMLPRSVDIVVGDVGDPSTVKS 274
TVLVVGATSRIGRIVVRKLMLRGY VKALVR+ D EV+ MLPRSVDIVVGDVG+PST+KS
Sbjct: 164 TVLVVGATSRIGRIVVRKLMLRGYTVKALVRKQDEEVMSMLPRSVDIVVGDVGEPSTLKS 223
Query: 275 AVSGCSKIIYCATARSTITGDLNRVDNQGVRNVSKAFQDYYNELAQLRAGKSSKSKLLIA 334
AV CSKIIYCATARSTIT DL RVD+ GV N++KAFQDY N LAQLRAGKSSKSKLL+A
Sbjct: 224 AVESCSKIIYCATARSTITADLTRVDHLGVYNLTKAFQDYNNRLAQLRAGKSSKSKLLLA 283
Query: 335 KFKSPKSLNGWEVDQGSYFPNTFASRFDEGIDASFDFSEAGQAVFSGFVFTRGGYVEISK 394
KFKS +SL+GWE+ QG+YF +T AS++D G+DA F+F+E +A FSG+VFTRGGYVE+SK
Sbjct: 284 KFKSAESLDGWEIRQGTYFQDTTASKYDGGMDAKFEFTETERAEFSGYVFTRGGYVELSK 343
Query: 395 RLSLPLGSTLDRYDGLLFSVGGNGRSYVVILETGPLADTSQSKKYFARMTTKVGFCRVRV 454
+LSLPLG+TLDRY+GL+ SVGGNGRSYVVILE GP +D SQSK+YFAR++TK GFCRVRV
Sbjct: 344 KLSLPLGTTLDRYEGLVLSVGGNGRSYVVILEAGPSSDMSQSKQYFARISTKAGFCRVRV 403
Query: 455 PFSAFRPVNPQDPPLDPFLVHTLTIRFEPKRQRPGDGSQSA-TDPRNFELILEYIKALPT 513
PFSAFRPVNP+DPPLDPFLVHTLTIRFEPKRQRP DG A D R+F L+ EYIKALP
Sbjct: 404 PFSAFRPVNPEDPPLDPFLVHTLTIRFEPKRQRPVDGLAGAQQDLRSFSLVFEYIKALPA 463
Query: 514 GQETDFILVSCSGSGIEPNRREQVLKAKKAGEDALRRSGLGYTIVRPGPLQEEPGGQRAL 573
GQETDFILVSC+GSG+E NRREQVLKAK+AGED+LRRSGLGYTI+RPGPL+EEPGGQRAL
Sbjct: 464 GQETDFILVSCTGSGVEANRREQVLKAKRAGEDSLRRSGLGYTIIRPGPLKEEPGGQRAL 523
Query: 574 IFDQGNRISQGISCADVADICVKALHDSTARNKSFDVCYEYVAKQGNELYELVAHLPDKA 633
IFDQGNRISQGISCADVADICVKALHDSTARNKSFDVC+EYVA+QG ELYELVAHLPDKA
Sbjct: 524 IFDQGNRISQGISCADVADICVKALHDSTARNKSFDVCHEYVAEQGIELYELVAHLPDKA 583
Query: 634 NNYLTPALSVLEKNT 648
NNYLTPALSVLEKNT
Sbjct: 584 NNYLTPALSVLEKNT 598
>AT4G18810.2 | chr4:10322263-10325735 REVERSE LENGTH=628
Length = 627
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 133/453 (29%), Positives = 193/453 (42%), Gaps = 62/453 (13%)
Query: 202 PMCEFTVPGAQDTTVLVVGATSRIGRIVVRKLMLRGYNVKALVRRNDAEVIDMLPRSVDI 261
P+ E G +LV GAT +GR +V L RG VKALVR N+ + ML +D+
Sbjct: 115 PVAEMGTSG----IILVAGATGGVGRRIVDILRKRGLPVKALVR-NEEKARKMLGPEIDL 169
Query: 262 VVGDVGDPST-VKSAVSGCSKIIYCATARSTITGDLN------RVDNQGVRNVSKAFQDY 314
+V D+ +T V G K+I A S I G + NQGVR +
Sbjct: 170 IVADITKENTLVPEKFKGVRKVI---NAVSVIVGPKEGDTPERQKYNQGVRFFEPEIKGD 226
Query: 315 YNELAQLRAGKS-----------SKSKLLIAKFKSPKSLNGWEVDQGSYFPNTFASRFDE 363
EL + K+ KL+ + W S F
Sbjct: 227 SPELVEYIGMKNLINAVRDGVGLENGKLIFGVGDNTFKDLPWGALDDVVMGGVSESNFIV 286
Query: 364 GIDASFDFSEAGQAVFSGFVFT--RGGYVEISKRLSLPLGSTLDRYDGLLFSVGGNGRSY 421
+ A + G +F G V T GG+ + + + P + YDGL + G+G Y
Sbjct: 287 DLTAGENGGPTG--IFKGIVSTTNNGGFTSVRTK-NFPEAENVSAYDGLELRLKGDGLRY 343
Query: 422 VVILETGPLADTSQSKKYFARMTTKVG-FCRVRVPFSAFRPVN-----PQDPPLDPFLVH 475
+I+ T DT Y A T G + VR+PFS+ RPV PP + +
Sbjct: 344 KLIVRTSQDWDTVG---YTASFDTSPGQWQSVRLPFSSLRPVFRARTVTDAPPFNASSII 400
Query: 476 TLTIRFEPKRQRPGDGSQSATDPRN-FELILEYIKALPTGQETD-FILVSCSG------S 527
+L + F + DG + T FEL L I+A T F+ V +G
Sbjct: 401 SLQLMFS---KFEYDGKLNPTFKEGPFELPLSSIRAYIQDPVTPRFVHVGSAGVTRPERP 457
Query: 528 GIEPNRR----------EQVLKAKKAGEDALRRSGLGYTIVRPGPLQEEPGGQRALIFDQ 577
G++ +++ + +L K GED +R SG+ + IVRP L EEP G LIF+Q
Sbjct: 458 GLDLSKQPPAVRLNKELDFILTYKLKGEDLIRDSGIPFAIVRPCALTEEPAGA-DLIFEQ 516
Query: 578 GNRISQGISCADVADICVKALHDSTARNKSFDV 610
G+ I+ +S +VA IC+ AL A NK+F+V
Sbjct: 517 GDNITGKVSRDEVARICIAALESPYALNKTFEV 549
>AT4G31530.2 | chr4:15282281-15284064 FORWARD LENGTH=339
Length = 338
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 14/88 (15%)
Query: 537 VLKAKKAGEDALRRSGLGYTIVRPGPLQEEP--------------GGQRALIFDQGNRIS 582
VLK KK GED LR SGL +TI+RPG L + P G +RA++ QG+ +
Sbjct: 212 VLKYKKMGEDFLRDSGLPFTIIRPGRLTDGPYTSYDLNTLLKATAGERRAVVIGQGDNLV 271
Query: 583 QGISCADVADICVKALHDSTARNKSFDV 610
+S VA+ C++AL + K++++
Sbjct: 272 GEVSRLVVAEACIQALDIEFTQGKAYEI 299
>AT2G37660.1 | chr2:15795481-15796977 REVERSE LENGTH=326
Length = 325
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 537 VLKAKKAGEDALRRSGLGYTIVRPGPLQEEPGGQRALIFDQGNRI----SQGISCADVAD 592
+L K+ E L SG+ YTI+R G LQ++ GG R L+ + + + ++ I+ ADVA+
Sbjct: 223 ILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAE 282
Query: 593 ICVKALHDSTARNKSFDVC 611
+CV+AL A+ K+ D+
Sbjct: 283 VCVQALQLEEAKFKALDLA 301
>AT4G35250.1 | chr4:16771401-16773269 REVERSE LENGTH=396
Length = 395
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%)
Query: 214 TTVLVVGATSRIGRIVVRKLMLRGYNVKALVRRNDAEVIDMLPRSVDIVVGDVGDPSTVK 273
T++LVVGAT +GR +VR+ + GY+V+ LVR A + +V D+ P T+
Sbjct: 80 TSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETIP 139
Query: 274 SAVSGCSKIIYCATAR 289
+ + G +I CAT R
Sbjct: 140 ATLVGIHTVIDCATGR 155
>AT4G33360.1 | chr4:16067989-16069374 REVERSE LENGTH=345
Length = 344
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 212 QDTTVLVVGATSRIGRIVVRKLMLRGYNVKALVRRNDAEVIDMLPRSVDIVVGDVGDPST 271
++ +LV G+T +G + L+ RG++V+ALVRR +++ D LP V++ GDV D +
Sbjct: 11 ENMKILVTGSTGYLGARLCHVLLRRGHSVRALVRRT-SDLSD-LPPEVELAYGDVTDYRS 68
Query: 272 VKSAVSGCSKIIYCATARSTITGDLNR---VDNQGVRNVSKAFQD 313
+ A SGC + + A D +R V+ G++NV +A ++
Sbjct: 69 LTDACSGCDIVFHAAALVEPWLPDPSRFISVNVGGLKNVLEAVKE 113
>AT5G02240.1 | chr5:451502-452984 FORWARD LENGTH=254
Length = 253
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 520 ILVSCSGSGIEPNR------REQVLKAKKAGEDALRRSGLGYTIVRPGPLQEEPGGQRAL 573
I+V S G P+ +L K+ E L SG YTI+R G L ++ GG R L
Sbjct: 128 IVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEGGVREL 187
Query: 574 IFDQGNRISQ----GISCADVADICVKALHDSTARNKSFDV 610
+ + + + Q + ADVA++C++AL A+NK+FD+
Sbjct: 188 LVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDL 228
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,083,915
Number of extensions: 446922
Number of successful extensions: 1081
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 1082
Number of HSP's successfully gapped: 8
Length of query: 648
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 543
Effective length of database: 8,227,889
Effective search space: 4467743727
Effective search space used: 4467743727
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)