Os02g0234500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NAD-dependent epimerase/dehydratase family protein.
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Os02g0234500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NAD-dependent epimerase/dehydratase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.93 | 0.289 | 12.5 | -1.44 | 1.24 | 0.516 | 0.645 | -0.309 | -0.506 | 10.1 | 10.2 | 1429 | -- | -- |
| 38.08 | 0.287 | 12.5 | -1.4 | 1.24 | 0.501 | 0.653 | -- | -0.486 | 10.2 | 10.21 | 1428 | -- | -- |
| 39.57 | 0.293 | 12.5 | -1.42 | 1.23 | 0.503 | -- | -0.372 | -0.504 | 10.1 | 10.21 | 1428 | -- | -- |
| 39.81 | 0.294 | 12.5 | -1.38 | 1.24 | 0.504 | -- | -- | -0.495 | 10.1 | 10.1 | 1428 | -- | -- |
| 70.49 | 0.393 | 12.5 | -1.19 | -- | 0.763 | -- | 0.235 | -0.403 | -- | 3.975 | 1606 | -- | -- |
| 45.57 | 0.316 | 12.5 | -1.23 | 1.22 | -- | 0.58 | -- | -0.337 | 10.1 | -- | -- | -- | -- |
| 46.89 | 0.321 | 12.5 | -1.21 | 1.21 | -- | -- | -- | -0.335 | 10.1 | -- | -- | -- | -- |
| 68.57 | 0.387 | 12.5 | -1.23 | -- | 0.772 | -- | -- | -0.36 | -- | 1.35 | 1615 | -- | -- |
| 77.68 | 0.41 | 12.5 | -- | 1.24 | 0.56 | -- | -- | -0.276 | 10.6 | 19.96 | 7191 | -- | -- |
| 135.73 | 0.544 | 12.5 | -1.22 | -- | -- | -- | -- | -0.337 | -- | -- | -- | -- | -- |
| 85.3 | 0.432 | 12.4 | -- | 1.22 | -- | -- | -- | -0.201 | 10.1 | -- | -- | -- | -- |
| 108.31 | 0.486 | 12.5 | -- | -- | 0.77 | -- | -- | -0.224 | -- | 1.35 | 1615 | -- | -- |
| 175.18 | 0.618 | 12.5 | -- | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.07 | humidity | 60 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 9 | 36.41 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 11 | 36.42 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 13 | 36.43 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 11 |
| 16 | 36.43 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 18 | 36.44 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 25 | 36.53 | humidity | 60 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 43 | 36.71 | radiation | 10 | 1440 | < th | dose dependent | sin | 19 | NA |
| 54 | 36.86 | humidity | 90 | 720 | < th | dose dependent | rect. | 13 | 11 |
| 73 | 36.94 | humidity | 50 | 720 | > th | dose dependent | sin | 16 | NA |
| 83 | 36.98 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 85 | 36.99 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 86 | 36.99 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 9 |
| 88 | 37.00 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 92 | 37.00 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 93 | 37.00 | radiation | 10 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 103 | 37.02 | humidity | 50 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 116 | 37.05 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 17 |
| 149 | 37.19 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 3 |
| 169 | 37.28 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 174 | 37.30 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 177 | 37.33 | humidity | 90 | 720 | < th | dose dependent | sin | 16 | NA |
| 179 | 37.33 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 2 |
| 184 | 37.36 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 5 |
| 187 | 37.37 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 203 | 37.40 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 13 |
| 342 | 37.63 | radiation | 10 | 1440 | > th | dose independent | sin | 21 | NA |
| 361 | 37.65 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 7 |
| 374 | 37.67 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 464 | 37.81 | radiation | 10 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 483 | 37.85 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 613 | 37.98 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 718 | 38.04 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 3 |
| 799 | 38.13 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 4 |
| 899 | 38.23 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 919 | 38.24 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 934 | 38.25 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 2 |
| 978 | 38.28 | humidity | 50 | 720 | > th | dose dependent | rect. | 24 | 23 |