BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0234500 Os02g0234500|AK068001
(587 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0234500 NAD-dependent epimerase/dehydratase family pro... 1099 0.0
Os06g0704700 NmrA-like family protein 100 2e-21
>Os02g0234500 NAD-dependent epimerase/dehydratase family protein
Length = 587
Score = 1099 bits (2843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 558/587 (95%), Positives = 558/587 (95%)
Query: 1 MSCCAASSSSPVLANPRGGFAASCSTRRNHRVIFLGSRQFSPIIYXXXXXXXXXXXXXEV 60
MSCCAASSSSPVLANPRGGFAASCSTRRNHRVIFLGSRQFSPIIY EV
Sbjct: 1 MSCCAASSSSPVLANPRGGFAASCSTRRNHRVIFLGSRQFSPIIYSPARRASSRLSRREV 60
Query: 61 IAFAGQQSWDIGRFVRTLYFFNGPPNPLKIVESILSSFTGSAPGEVPKKMESSDXXXXXX 120
IAFAGQQSWDIGRFVRTLYFFNGPPNPLKIVESILSSFTGSAPGEVPKKMESSD
Sbjct: 61 IAFAGQQSWDIGRFVRTLYFFNGPPNPLKIVESILSSFTGSAPGEVPKKMESSDVVLVTG 120
Query: 121 XXXXXXXXXXDILRNKGIPVRVLARNEEKARSMLGPDVDLIIGDVTKENSLDPKYFKGIK 180
DILRNKGIPVRVLARNEEKARSMLGPDVDLIIGDVTKENSLDPKYFKGIK
Sbjct: 121 ATGGVGRRVVDILRNKGIPVRVLARNEEKARSMLGPDVDLIIGDVTKENSLDPKYFKGIK 180
Query: 181 KVVNAVSVIVGPKEGDTPDRQKYKQGIKFFEPEIKGPSPEMVEYLGMQNLINAVKNSVGL 240
KVVNAVSVIVGPKEGDTPDRQKYKQGIKFFEPEIKGPSPEMVEYLGMQNLINAVKNSVGL
Sbjct: 181 KVVNAVSVIVGPKEGDTPDRQKYKQGIKFFEPEIKGPSPEMVEYLGMQNLINAVKNSVGL 240
Query: 241 TEGKLLFGGTGNLSGKIVWGALDDVVMGGVSESTFQIQPTGSETDGPTGLFKGTVSTSNN 300
TEGKLLFGGTGNLSGKIVWGALDDVVMGGVSESTFQIQPTGSETDGPTGLFKGTVSTSNN
Sbjct: 241 TEGKLLFGGTGNLSGKIVWGALDDVVMGGVSESTFQIQPTGSETDGPTGLFKGTVSTSNN 300
Query: 301 GGFTSIRTKNFTVPEDLSAYDGIELRVKGDGRRYKLIVRTSFEWDTVGYIASFDTTKGEW 360
GGFTSIRTKNFTVPEDLSAYDGIELRVKGDGRRYKLIVRTSFEWDTVGYIASFDTTKGEW
Sbjct: 301 GGFTSIRTKNFTVPEDLSAYDGIELRVKGDGRRYKLIVRTSFEWDTVGYIASFDTTKGEW 360
Query: 361 QSVKLPFSSLNPVFRARTMPDAAPFDASNVTSLQLMFSKFEYDGKLNPTFTEGSFELPFS 420
QSVKLPFSSLNPVFRARTMPDAAPFDASNVTSLQLMFSKFEYDGKLNPTFTEGSFELPFS
Sbjct: 361 QSVKLPFSSLNPVFRARTMPDAAPFDASNVTSLQLMFSKFEYDGKLNPTFTEGSFELPFS 420
Query: 421 SIRAYINEPITPRFVHVSSAGVTRPERPGLDLSKQPPAVRMNKELGSILTYKLKGEDLIR 480
SIRAYINEPITPRFVHVSSAGVTRPERPGLDLSKQPPAVRMNKELGSILTYKLKGEDLIR
Sbjct: 421 SIRAYINEPITPRFVHVSSAGVTRPERPGLDLSKQPPAVRMNKELGSILTYKLKGEDLIR 480
Query: 481 ESGIPYTIVRPCALTEEPAGADLIFDQGDNITGKISREEIAFICVAALASPNAVEKTFEV 540
ESGIPYTIVRPCALTEEPAGADLIFDQGDNITGKISREEIAFICVAALASPNAVEKTFEV
Sbjct: 481 ESGIPYTIVRPCALTEEPAGADLIFDQGDNITGKISREEIAFICVAALASPNAVEKTFEV 540
Query: 541 KSTVPFSEPFVVDPSNPPPEKDYDVYFKELKAGITGKEALEGTPAQV 587
KSTVPFSEPFVVDPSNPPPEKDYDVYFKELKAGITGKEALEGTPAQV
Sbjct: 541 KSTVPFSEPFVVDPSNPPPEKDYDVYFKELKAGITGKEALEGTPAQV 587
>Os06g0704700 NmrA-like family protein
Length = 648
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 132/430 (30%), Positives = 193/430 (44%), Gaps = 80/430 (18%)
Query: 136 KGIPVRVLAR-NEEKARSMLGPDVDLIIGDVTKENSLDPKYFK----GIKKVV---NAVS 187
+G V+ L R N+ + ML VD+++GDV DP K G K++ A S
Sbjct: 236 RGYNVKALVRRNDAEVIDMLPRSVDIVVGDVG-----DPSTVKSAVSGCSKIIYCATARS 290
Query: 188 VIVGPKEGDTPDRQKYKQGIKFFEPEIKGPSPEMVEYLGMQNLINAVKNSVGLTEGKLL- 246
I G + + D Q + K F+ +Y + A K+S + KLL
Sbjct: 291 TITG--DLNRVDNQGVRNVSKAFQ-----------DYYNELAQLRAGKSS----KSKLLI 333
Query: 247 --FGGTGNLSGKIVWGALDDVVMGGVSESTFQ------IQPTGSETDGPTGLFKGTVSTS 298
F +L+G W +V G +TF I + ++ +F G V T
Sbjct: 334 AKFKSPKSLNG---W----EVDQGSYFPNTFASRFDEGIDASFDFSEAGQAVFSGFVFT- 385
Query: 299 NNGGFTSIRTKNFTVP--EDLSAYDGIELRVKGDGRRYKLIVRTSFEWDTV---GYIASF 353
GG+ I +K ++P L YDG+ V G+GR Y +I+ T DT Y A
Sbjct: 386 -RGGYVEI-SKRLSLPLGSTLDRYDGLLFSVGGNGRSYVVILETGPLADTSQSKKYFARM 443
Query: 354 DTTKGEWQSVKLPFSSLNPVFRARTMPDAAPFDASNVTSLQLMFS-KFEYDGKLNPTFTE 412
TTK + V++PFS+ PV P P D V +L + F K + G + + T+
Sbjct: 444 -TTKVGFCRVRVPFSAFRPV-----NPQDPPLDPFLVHTLTIRFEPKRQRPGDGSQSATD 497
Query: 413 -GSFELPFSSIRAYINEPITPRFVHVSSAGVTRPERPGLDLSKQPPAVRMNKELGSILTY 471
+FEL I+A T F+ VS +G G++ +++ +L
Sbjct: 498 PRNFELILEYIKALPTGQETD-FILVSCSG------SGIEPNRRE----------QVLKA 540
Query: 472 KLKGEDLIRESGIPYTIVRPCALTEEPAGAD-LIFDQGDNITGKISREEIAFICVAALAS 530
K GED +R SG+ YTIVRP L EEP G LIFDQG+ I+ IS ++A ICV AL
Sbjct: 541 KKAGEDALRRSGLGYTIVRPGPLQEEPGGQRALIFDQGNRISQGISCADVADICVKALHD 600
Query: 531 PNAVEKTFEV 540
A K+F+V
Sbjct: 601 STARNKSFDV 610
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,504,218
Number of extensions: 885820
Number of successful extensions: 1973
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1974
Number of HSP's successfully gapped: 2
Length of query: 587
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 481
Effective length of database: 11,501,117
Effective search space: 5532037277
Effective search space used: 5532037277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)