BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0234500 Os02g0234500|AK068001
(587 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G18810.2 | chr4:10322263-10325735 REVERSE LENGTH=628 769 0.0
AT1G16720.1 | chr1:5723161-5726248 FORWARD LENGTH=599 98 1e-20
AT4G31530.2 | chr4:15282281-15284064 FORWARD LENGTH=339 66 5e-11
AT1G72420.1 | chr1:27261367-27263186 REVERSE LENGTH=229 64 3e-10
AT1G17350.2 | chr1:5942391-5944330 FORWARD LENGTH=237 52 1e-06
AT5G02240.1 | chr5:451502-452984 FORWARD LENGTH=254 51 2e-06
AT2G34460.1 | chr2:14529635-14530732 FORWARD LENGTH=281 50 3e-06
>AT4G18810.2 | chr4:10322263-10325735 REVERSE LENGTH=628
Length = 627
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/522 (71%), Positives = 429/522 (82%)
Query: 60 VIAFAGQQSWDIGRFVRTLYFFNGPPNPLKIVESILSSFTGSAPGEVPKKMESSDXXXXX 119
V A +G Q WD GRFV+TLYFFNGPP+PLK V S+ T A E +M +S
Sbjct: 69 VTAKSGSQGWDFGRFVKTLYFFNGPPSPLKFVSSVFEKLTNGATEEPVAEMGTSGIILVA 128
Query: 120 XXXXXXXXXXXDILRNKGIPVRVLARNEEKARSMLGPDVDLIIGDVTKENSLDPKYFKGI 179
DILR +G+PV+ L RNEEKAR MLGP++DLI+ D+TKEN+L P+ FKG+
Sbjct: 129 GATGGVGRRIVDILRKRGLPVKALVRNEEKARKMLGPEIDLIVADITKENTLVPEKFKGV 188
Query: 180 KKVVNAVSVIVGPKEGDTPDRQKYKQGIKFFEPEIKGPSPEMVEYLGMQNLINAVKNSVG 239
+KV+NAVSVIVGPKEGDTP+RQKY QG++FFEPEIKG SPE+VEY+GM+NLINAV++ VG
Sbjct: 189 RKVINAVSVIVGPKEGDTPERQKYNQGVRFFEPEIKGDSPELVEYIGMKNLINAVRDGVG 248
Query: 240 LTEGKLLFGGTGNLSGKIVWGALDDVVMGGVSESTFQIQPTGSETDGPTGLFKGTVSTSN 299
L GKL+FG N + WGALDDVVMGGVSES F + T E GPTG+FKG VST+N
Sbjct: 249 LENGKLIFGVGDNTFKDLPWGALDDVVMGGVSESNFIVDLTAGENGGPTGIFKGIVSTTN 308
Query: 300 NGGFTSIRTKNFTVPEDLSAYDGIELRVKGDGRRYKLIVRTSFEWDTVGYIASFDTTKGE 359
NGGFTS+RTKNF E++SAYDG+ELR+KGDG RYKLIVRTS +WDTVGY ASFDT+ G+
Sbjct: 309 NGGFTSVRTKNFPEAENVSAYDGLELRLKGDGLRYKLIVRTSQDWDTVGYTASFDTSPGQ 368
Query: 360 WQSVKLPFSSLNPVFRARTMPDAAPFDASNVTSLQLMFSKFEYDGKLNPTFTEGSFELPF 419
WQSV+LPFSSL PVFRART+ DA PF+AS++ SLQLMFSKFEYDGKLNPTF EG FELP
Sbjct: 369 WQSVRLPFSSLRPVFRARTVTDAPPFNASSIISLQLMFSKFEYDGKLNPTFKEGPFELPL 428
Query: 420 SSIRAYINEPITPRFVHVSSAGVTRPERPGLDLSKQPPAVRMNKELGSILTYKLKGEDLI 479
SSIRAYI +P+TPRFVHV SAGVTRPERPGLDLSKQPPAVR+NKEL ILTYKLKGEDLI
Sbjct: 429 SSIRAYIQDPVTPRFVHVGSAGVTRPERPGLDLSKQPPAVRLNKELDFILTYKLKGEDLI 488
Query: 480 RESGIPYTIVRPCALTEEPAGADLIFDQGDNITGKISREEIAFICVAALASPNAVEKTFE 539
R+SGIP+ IVRPCALTEEPAGADLIF+QGDNITGK+SR+E+A IC+AAL SP A+ KTFE
Sbjct: 489 RDSGIPFAIVRPCALTEEPAGADLIFEQGDNITGKVSRDEVARICIAALESPYALNKTFE 548
Query: 540 VKSTVPFSEPFVVDPSNPPPEKDYDVYFKELKAGITGKEALE 581
VKSTVPFSEPF VDP NPPPEKDY+ YFK LK GITGKEALE
Sbjct: 549 VKSTVPFSEPFTVDPENPPPEKDYNEYFKTLKDGITGKEALE 590
>AT1G16720.1 | chr1:5723161-5726248 FORWARD LENGTH=599
Length = 598
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 121/438 (27%), Positives = 183/438 (41%), Gaps = 95/438 (21%)
Query: 136 KGIPVRVLARNE-EKARSMLGPDVDLIIGDVTKENSLDPKYFKGIKKVVNAVSVIVGPKE 194
+G V+ L R + E+ SML VD+++GDV +P K + + + +
Sbjct: 185 RGYTVKALVRKQDEEVMSMLPRSVDIVVGDVG-----EPSTLKSAVESCSKIIYCATARS 239
Query: 195 GDTPDRQKYKQGIKFFEPEIKGPSPEMVEYLGMQNLINAVKN---------SVGLTEGKL 245
T D + V++LG+ NL A ++ + ++ KL
Sbjct: 240 TITADLTR-------------------VDHLGVYNLTKAFQDYNNRLAQLRAGKSSKSKL 280
Query: 246 L---FGGTGNLSGKIVWGALDDVVMGGVSESTFQIQPTGSETDG-----------PTGLF 291
L F +L G W + + T+ T S+ DG F
Sbjct: 281 LLAKFKSAESLDG---WE---------IRQGTYFQDTTASKYDGGMDAKFEFTETERAEF 328
Query: 292 KGTVSTSNNGGFTSIRTKNFTVP--EDLSAYDGIELRVKGDGRRYKLIVRTSFEWD---T 346
G V T GG+ + +K ++P L Y+G+ L V G+GR Y +I+ D +
Sbjct: 329 SGYVFT--RGGYVEL-SKKLSLPLGTTLDRYEGLVLSVGGNGRSYVVILEAGPSSDMSQS 385
Query: 347 VGYIASFDTTKGEWQSVKLPFSSLNPVFRARTMPDAAPFDASNVTSLQLMFS---KFEYD 403
Y A T G + V++PFS+ PV P+ P D V +L + F + D
Sbjct: 386 KQYFARISTKAG-FCRVRVPFSAFRPV-----NPEDPPLDPFLVHTLTIRFEPKRQRPVD 439
Query: 404 GKLNPTFTEGSFELPFSSIRAYINEPITPRFVHVSSAGVTRPERPGLDLSKQPPAVRMNK 463
G SF L F I+A T F+ VS G G++ +++
Sbjct: 440 GLAGAQQDLRSFSLVFEYIKALPAGQETD-FILVSCTG------SGVEANRRE------- 485
Query: 464 ELGSILTYKLKGEDLIRESGIPYTIVRPCALTEEPAGAD-LIFDQGDNITGKISREEIAF 522
+L K GED +R SG+ YTI+RP L EEP G LIFDQG+ I+ IS ++A
Sbjct: 486 ---QVLKAKRAGEDSLRRSGLGYTIIRPGPLKEEPGGQRALIFDQGNRISQGISCADVAD 542
Query: 523 ICVAALASPNAVEKTFEV 540
ICV AL A K+F+V
Sbjct: 543 ICVKALHDSTARNKSFDV 560
>AT4G31530.2 | chr4:15282281-15284064 FORWARD LENGTH=339
Length = 338
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 63/125 (50%), Gaps = 25/125 (20%)
Query: 433 RFVHVSSAGVTRPERPGLDLSKQPPAVRMNKELGSILTYKLKGEDLIRESGIPYTIVRPC 492
R V VSS GVT+ S + P MN L +L YK GED +R+SG+P+TI+RP
Sbjct: 187 RVVLVSSVGVTK--------SNELPWSIMN--LFGVLKYKKMGEDFLRDSGLPFTIIRPG 236
Query: 493 ALTEEP-AGADL--------------IFDQGDNITGKISREEIAFICVAALASPNAVEKT 537
LT+ P DL + QGDN+ G++SR +A C+ AL K
Sbjct: 237 RLTDGPYTSYDLNTLLKATAGERRAVVIGQGDNLVGEVSRLVVAEACIQALDIEFTQGKA 296
Query: 538 FEVKS 542
+E+ S
Sbjct: 297 YEINS 301
>AT1G72420.1 | chr1:27261367-27263186 REVERSE LENGTH=229
Length = 228
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 17/182 (9%)
Query: 258 VWGALDDVVMGGVSESTFQIQPTGSETDGPTGLFKGTVSTS---------NNGGFTSIRT 308
W D GG+S ++ +I+ G+ +D G+F G +ST N GF +R+
Sbjct: 45 TWHLYSDSEYGGLSSASLEIKDGGNRSD-CNGVFSGNLSTDMREGSKWNINRSGFCGMRS 103
Query: 309 KNFTVPEDLSAYDGIELRVKGDGRRYKLIVRTSFEWDTVG------YIASFDTTKGEWQS 362
K F DL YD I LR+KGDGR Y + T ++ G + A KG W +
Sbjct: 104 KKFDGFIDLEGYDSIALRLKGDGRCYISTIYTENWVNSPGQAEDNSWQAFVFAPKGNWYT 163
Query: 363 VKLPFSSLNPVFRARTMPDAAPFDASNVTSLQLMFSKFEYDGKLNPTFTEGSFELPFSSI 422
K+P + P ++ + + +V + L + + G + G F++ I
Sbjct: 164 AKVPLTRYLPTWKGNVIDAEMEMNPGHVVGMSLSVNA-QGGGFIGAKSGAGDFQVEIDWI 222
Query: 423 RA 424
+A
Sbjct: 223 KA 224
>AT1G17350.2 | chr1:5942391-5944330 FORWARD LENGTH=237
Length = 236
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 259 WGALDDVVMGGVSESTFQIQPTGSETDGPTGLFKGTVSTS---------NNGGFTSIRTK 309
W D GG+S ++ +I G +D TG+F G +S + GF +R+K
Sbjct: 46 WHLYSDSEYGGLSSASLEIPDKGDGSD-CTGVFSGNLSVDLSEGSKWNISRSGFCGMRSK 104
Query: 310 NFTVPEDLSAYDGIELRVKGDGRRYKLIVRT 340
F DL YD I LR++GDGR Y + T
Sbjct: 105 KFDGFIDLDGYDAIALRIRGDGRCYISTIYT 135
>AT5G02240.1 | chr5:451502-452984 FORWARD LENGTH=254
Length = 253
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 433 RFVHVSSAGVTRPERPGLDLSKQPPAVRMNKELGSILTYKLKGEDLIRESGIPYTIVRPC 492
V V S G T P+ P L G+IL +K K E + +SG PYTI+R
Sbjct: 127 HIVVVGSMGGTNPDHPLNKLGN-----------GNILVWKRKAEQYLADSGTPYTIIRAG 175
Query: 493 ALTEEPAGA-DLIFDQGDNI----TGKISREEIAFICVAALASPNAVEKTFEVKS 542
L ++ G +L+ + D + T + R ++A +C+ AL A K F++ S
Sbjct: 176 GLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDLGS 230
>AT2G34460.1 | chr2:14529635-14530732 FORWARD LENGTH=281
Length = 280
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 457 PAVRMNKELGSILTYKLKGEDLIRESGIPYTIVRPCALTEEPAGADLIFDQGDNI-TGKI 515
PA G L KL+ E I++SGI YTIVRP L +P +++ + D + G I
Sbjct: 175 PAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDPPTGNVVMEPEDTLYEGSI 234
Query: 516 SREEIAFICVAALASPNAVEKTFEVKSTVPFSEPFVVDPSNPPPEKDYDVYFKELK 571
SR+ +A + V AL E +F+V V +E P++ Y F +K
Sbjct: 235 SRDLVAEVAVEALLQE---ESSFKVVEIVARAE---------APKRSYKDLFASVK 278
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.136 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,049,611
Number of extensions: 568749
Number of successful extensions: 1183
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 1176
Number of HSP's successfully gapped: 7
Length of query: 587
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 483
Effective length of database: 8,255,305
Effective search space: 3987312315
Effective search space used: 3987312315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)