BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0701200 Os06g0701200|AK064009
(616 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0701200 UTP--glucose-1-phosphate uridylyltransferase f... 1203 0.0
Os08g0206900 UTP--glucose-1-phosphate uridylyltransferase f... 95 2e-19
Os04g0613700 UTP--glucose-1-phosphate uridylyltransferase f... 90 4e-18
>Os06g0701200 UTP--glucose-1-phosphate uridylyltransferase family protein
Length = 616
Score = 1203 bits (3113), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/579 (100%), Positives = 579/579 (100%)
Query: 38 HEVKLAKLLLSEGQSHLFEHWPEPGVDDDKKRNFFDQVCRLNSSYPGGLASYIQNARKLL 97
HEVKLAKLLLSEGQSHLFEHWPEPGVDDDKKRNFFDQVCRLNSSYPGGLASYIQNARKLL
Sbjct: 38 HEVKLAKLLLSEGQSHLFEHWPEPGVDDDKKRNFFDQVCRLNSSYPGGLASYIQNARKLL 97
Query: 98 ADSKAGKNPYDGFSPSVPSGEVLTFGDDNFVSLEEAGVKEARHAAFVLVAGGLGERLGYK 157
ADSKAGKNPYDGFSPSVPSGEVLTFGDDNFVSLEEAGVKEARHAAFVLVAGGLGERLGYK
Sbjct: 98 ADSKAGKNPYDGFSPSVPSGEVLTFGDDNFVSLEEAGVKEARHAAFVLVAGGLGERLGYK 157
Query: 158 GIKVALPRETTTGKCFLQHYIESILALQEASCKLVEGECNTKIPFVIMTSDDTNALTVKL 217
GIKVALPRETTTGKCFLQHYIESILALQEASCKLVEGECNTKIPFVIMTSDDTNALTVKL
Sbjct: 158 GIKVALPRETTTGKCFLQHYIESILALQEASCKLVEGECNTKIPFVIMTSDDTNALTVKL 217
Query: 218 LESNSYFGMEPSQVHILKQEKVACLADNDARLALDPNDKYKIQTKPHGHGDVHALLYSSG 277
LESNSYFGMEPSQVHILKQEKVACLADNDARLALDPNDKYKIQTKPHGHGDVHALLYSSG
Sbjct: 218 LESNSYFGMEPSQVHILKQEKVACLADNDARLALDPNDKYKIQTKPHGHGDVHALLYSSG 277
Query: 278 LLEQWKSTGRKWVLFFQDTNGLLFNAIPSALGVSATKGYNVNSLAVPRKAKEAIGGITKL 337
LLEQWKSTGRKWVLFFQDTNGLLFNAIPSALGVSATKGYNVNSLAVPRKAKEAIGGITKL
Sbjct: 278 LLEQWKSTGRKWVLFFQDTNGLLFNAIPSALGVSATKGYNVNSLAVPRKAKEAIGGITKL 337
Query: 338 THVDGRTMVINVEYNQLDPLLRATGHPDGDANCETGYSPYPGNINQLILEIGPYMEELQK 397
THVDGRTMVINVEYNQLDPLLRATGHPDGDANCETGYSPYPGNINQLILEIGPYMEELQK
Sbjct: 338 THVDGRTMVINVEYNQLDPLLRATGHPDGDANCETGYSPYPGNINQLILEIGPYMEELQK 397
Query: 398 THGAISEFVNPKYTDSTKTAFKSSTRLECMMQDYPKTLPPSAKVGFTVMDAWLTYAPVKN 457
THGAISEFVNPKYTDSTKTAFKSSTRLECMMQDYPKTLPPSAKVGFTVMDAWLTYAPVKN
Sbjct: 398 THGAISEFVNPKYTDSTKTAFKSSTRLECMMQDYPKTLPPSAKVGFTVMDAWLTYAPVKN 457
Query: 458 NPEDSAKVPKGNPYHSATSGEMAIYRANSLILRKAGAQIADPVIDTFNGQEVEVWPRITW 517
NPEDSAKVPKGNPYHSATSGEMAIYRANSLILRKAGAQIADPVIDTFNGQEVEVWPRITW
Sbjct: 458 NPEDSAKVPKGNPYHSATSGEMAIYRANSLILRKAGAQIADPVIDTFNGQEVEVWPRITW 517
Query: 518 IPRWGLIFKDVKAKVHSNSSVSQRSALVINGKNITIQGLSLDGTLIVNAKDEAKFNVTGH 577
IPRWGLIFKDVKAKVHSNSSVSQRSALVINGKNITIQGLSLDGTLIVNAKDEAKFNVTGH
Sbjct: 518 IPRWGLIFKDVKAKVHSNSSVSQRSALVINGKNITIQGLSLDGTLIVNAKDEAKFNVTGH 577
Query: 578 IENKGWTIQHVDHKDTSEKEEIRIRGFKFNKVEQLELNY 616
IENKGWTIQHVDHKDTSEKEEIRIRGFKFNKVEQLELNY
Sbjct: 578 IENKGWTIQHVDHKDTSEKEEIRIRGFKFNKVEQLELNY 616
>Os08g0206900 UTP--glucose-1-phosphate uridylyltransferase family protein
Length = 489
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 13/217 (5%)
Query: 142 AFVLVAGGLGERLGYKGIKVALPRETTTGKCFLQHYIESILALQEASCKLVEGECNTKIP 201
A VL+AGG G RLG K +GK Q E IL +Q+ + + +G +I
Sbjct: 118 AVVLLAGGQGTRLGSSDPKGCFSIGLPSGKSLFQLQAERILCIQKLAAQSTDG--TPQIH 175
Query: 202 FVIMTSDDTNALTVKLLESNSYFGMEPSQVHILKQEKVACLADNDARLALDPNDKYKIQT 261
+ IMTS T+ T K ES+ YFG+EP QV +Q + C++ D R ++ YK+
Sbjct: 176 WYIMTSPFTDEATRKFFESHRYFGLEPDQVTFFQQGTIPCVS-ADGRFIME--TPYKVAR 232
Query: 262 KPHGHGDVHALLYSSGLLEQWKSTGRKWVLFFQDTNGLLFNAIPSALGVSATKGYNVNSL 321
P G+G V+A L S LL+ G K+V + N L+ A P+ LG KG + +
Sbjct: 233 APDGNGGVYAALKSQRLLDDMAGRGVKYVDCYGVDNVLVRVADPTFLGYFIDKGVSAAAK 292
Query: 322 AVPRKA--KEAIGGITKLTHVDGRTMVIN-VEYNQLD 355
V RKA +E +G + GR ++ VEY+++D
Sbjct: 293 VV-RKAYPQEKVGVFVQ----RGRGGPLSVVEYSEMD 324
>Os04g0613700 UTP--glucose-1-phosphate uridylyltransferase family protein
Length = 545
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/219 (33%), Positives = 109/219 (49%), Gaps = 16/219 (7%)
Query: 142 AFVLVAGGLGERLGYKGIKVALPRETTTGKCFLQHYIESILALQEASCKLVEGECNTKIP 201
A VL+AGG G RLG K +GK Q E IL +Q+ + + N +P
Sbjct: 173 AVVLLAGGQGTRLGSSDPKGCFSIGLPSGKSLFQLQAERILCVQKLAA---QSSPNNTVP 229
Query: 202 --FVIMTSDDTNALTVKLLESNSYFGMEPSQVHILKQEKVACLADNDARLALDPNDKYKI 259
+ IMTS T+ +T K ES YFG+E QV +Q + C++ D R ++ YK+
Sbjct: 230 IHWYIMTSPFTDDITRKFFESRKYFGLEADQVTFFQQGTLPCVS-ADGRFIME--TPYKV 286
Query: 260 QTKPHGHGDVHALLYSSGLLEQWKSTGRKWVLFFQDTNGLLFNAIPSALGVSATKGYNVN 319
P G+G V+A L S LLE S G K+V + N L+ A P+ LG K + +
Sbjct: 287 AKAPDGNGGVYAALKSRRLLEDMSSRGVKYVDCYGVDNALVRVADPTFLGYFIDKAVS-S 345
Query: 320 SLAVPRKA--KEAIGGITKLTHVDGRTMVIN-VEYNQLD 355
+ V RKA +E +G + GR ++ VEY+++D
Sbjct: 346 AAKVVRKAYPQENVGVFVR----RGRGGPLSVVEYSEMD 380
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,607,468
Number of extensions: 899717
Number of successful extensions: 1758
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1754
Number of HSP's successfully gapped: 3
Length of query: 616
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 509
Effective length of database: 11,448,903
Effective search space: 5827491627
Effective search space used: 5827491627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)