BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0683400 Os06g0683400|AK112082
         (125 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0683400  Similar to EF-hand Ca2+-binding protein CCD1        182   4e-47
Os02g0122600  EF-Hand type domain containing protein              107   2e-24
Os01g0783700  Similar to EF-hand Ca2+-binding protein CCD1        104   2e-23

>Os06g0683400 Similar to EF-hand Ca2+-binding protein CCD1
          Length = 125

 Score =  182 bits (463), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/111 (85%), Positives = 95/111 (85%)

Query: 15  GFEDYLPVMAERLGEEGLMQELASGFRLLMDPASGLITFDSLRRNAPXXXXXXXXXXXXX 74
           GFEDYLPVMAERLGEEGLMQELASGFRLLMDPASGLITFDSLRRNAP             
Sbjct: 15  GFEDYLPVMAERLGEEGLMQELASGFRLLMDPASGLITFDSLRRNAPLLGLGGMSDDDLR 74

Query: 75  XXXAEGDFDGDGALSEMEFCVLMVRLSPDLMDEPRRWLDDAVAQASQFLFH 125
              AEGDFDGDGALSEMEFCVLMVRLSPDLMDEPRRWLDDAVAQASQFLFH
Sbjct: 75  GMLAEGDFDGDGALSEMEFCVLMVRLSPDLMDEPRRWLDDAVAQASQFLFH 125



>Os02g0122600 EF-Hand type domain containing protein
          Length = 147

 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 69/107 (64%), Gaps = 5/107 (4%)

Query: 16  FEDYLPVMAERLGEEGLMQELASGFRLLMDPASGLITFDSLRRNAPXXXXXXXXXXXXXX 75
           +ED +PVMA RLG EGL+ EL +GFRLL DPA G IT +SLRR+A               
Sbjct: 28  YEDLMPVMAGRLGAEGLLSELRAGFRLLADPARGAITAESLRRSAASVLGLGGGGGEMTV 87

Query: 76  XXA-----EGDFDGDGALSEMEFCVLMVRLSPDLMDEPRRWLDDAVA 117
             A     EGD DGDGALSE EFCVLMVRLSP +M +   WL++A+A
Sbjct: 88  EEAAAMVREGDQDGDGALSEAEFCVLMVRLSPGIMGDAEGWLEEAIA 134



>Os01g0783700 Similar to EF-hand Ca2+-binding protein CCD1
          Length = 111

 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/96 (58%), Positives = 64/96 (66%), Gaps = 1/96 (1%)

Query: 16  FEDYLPVMAERLGEEGLMQELASGFRLLMDPASGLITFDSLRRNAPXXXXXXXXXXXXXX 75
           FED+LP MA +LG EGL++EL  GF LLMDP +G ITF SL+RNA               
Sbjct: 12  FEDFLPSMARKLGVEGLIEELCKGFELLMDPGAGKITFRSLKRNAAMLGLGELRDDELSE 71

Query: 76  XXAEGDFDGDGALSEMEFCVLMVRLSPDLM-DEPRR 110
              EGD DGDGAL +MEFCVLMVRLSP+LM DE  R
Sbjct: 72  MMREGDLDGDGALDQMEFCVLMVRLSPELMQDESHR 107



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,298,587
Number of extensions: 100482
Number of successful extensions: 224
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 3
Length of query: 125
Length of database: 17,035,801
Length adjustment: 88
Effective length of query: 37
Effective length of database: 12,440,969
Effective search space: 460315853
Effective search space used: 460315853
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)