Os06g0683400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to EF-hand Ca2+-binding protein CCD1.
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Os06g0683400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to EF-hand Ca2+-binding protein CCD1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 253.61 | 0.748 | 10.7 | -0.14 | 5.91 | -6.61 | 4.02 | -2.96 | 0.27 | 23.1 | 6.773 | 90 | 7 | -- |
| 256.47 | 0.746 | 10.7 | -0.2 | 6.54 | -6.98 | 1.16 | -- | 0.291 | 22.3 | 7.151 | 67 | 7.56 | -- |
| 256.22 | 0.746 | 10.7 | -0.189 | 5.95 | -6.63 | -- | 1.01 | 0.276 | 23 | 7.168 | 92 | 7.06 | -- |
| 260.24 | 0.751 | 10.7 | -0.257 | 5.82 | -6.5 | -- | -- | 0.268 | 23.1 | 7.081 | 92 | 7 | -- |
| 375.16 | 0.907 | 10.6 | -0.462 | -- | -0.648 | -- | 1.2 | 0.198 | -- | 7.168 | 92 | 7.06 | -- |
| 294.01 | 0.804 | 10.6 | -0.456 | 1.43 | -- | -0.746 | -- | 0.229 | 15.7 | -- | -- | -- | -- |
| 295.66 | 0.805 | 10.6 | -0.468 | 1.43 | -- | -- | -- | 0.225 | 15.7 | -- | -- | -- | -- |
| 295.66 | 0.801 | 10.6 | -0.468 | -- | -1.43 | -- | -- | 0.225 | -- | 13.46 | 400 | 5.59 | -- |
| 262.23 | 0.754 | 10.7 | -- | 5.81 | -6.49 | -- | -- | 0.302 | 23 | 7.001 | 92 | 7.03 | -- |
| 408.78 | 0.945 | 10.6 | -0.528 | -- | -- | -- | -- | 0.187 | -- | -- | -- | -- | -- |
| 301.44 | 0.812 | 10.6 | -- | 1.44 | -- | -- | -- | 0.277 | 15.7 | -- | -- | -- | -- |
| 301.44 | 0.809 | 10.6 | -- | -- | -1.44 | -- | -- | 0.277 | -- | 21.67 | 385 | 5.47 | -- |
| 416.12 | 0.952 | 10.6 | -- | -- | -- | -- | -- | 0.245 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 254.54 | wind | 7 | 90 | < th | dose independent | sin | 13 | NA |
| 5 | 257.52 | wind | 7 | 90 | > th | dose independent | sin | 13 | NA |
| 9 | 258.97 | wind | 5 | 90 | > th | dose dependent | sin | 14 | NA |
| 17 | 261.32 | wind | 5 | 90 | > th | dose dependent | rect. | 13 | 19 |
| 19 | 261.57 | wind | 5 | 90 | > th | dose dependent | rect. | 13 | 16 |
| 26 | 262.08 | temperature | 20 | 90 | > th | dose independent | rect. | 13 | 14 |
| 27 | 262.19 | wind | 7 | 90 | > th | dose independent | rect. | 13 | 19 |
| 30 | 262.30 | wind | 7 | 90 | > th | dose independent | rect. | 13 | 16 |
| 59 | 263.00 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 20 |
| 61 | 263.07 | wind | 7 | 90 | > th | dose independent | rect. | 17 | 15 |
| 65 | 263.23 | wind | 7 | 90 | > th | dose independent | rect. | 17 | 12 |
| 75 | 263.43 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 17 |
| 84 | 263.68 | wind | 7 | 10 | < th | dose independent | sin | 12 | NA |
| 96 | 263.99 | temperature | 20 | 90 | < th | dose independent | rect. | 16 | 11 |
| 97 | 264.02 | wind | 7 | 270 | < th | dose independent | rect. | 15 | 23 |
| 121 | 264.69 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 11 |
| 148 | 265.13 | temperature | 20 | 10 | < th | dose independent | sin | 14 | NA |
| 186 | 265.80 | wind | 7 | 720 | < th | dose independent | rect. | 8 | 20 |
| 198 | 266.00 | wind | 5 | 90 | < th | dose independent | rect. | 8 | 21 |
| 212 | 266.26 | temperature | 20 | 90 | < th | dose independent | sin | 15 | NA |
| 213 | 266.28 | wind | 7 | 270 | < th | dose independent | rect. | 7 | 14 |
| 236 | 266.51 | wind | 7 | 90 | > th | dose dependent | rect. | 17 | 15 |
| 244 | 266.58 | wind | 7 | 90 | > th | dose dependent | rect. | 17 | 12 |
| 292 | 267.00 | wind | 7 | 720 | < th | dose independent | rect. | 8 | 17 |
| 293 | 267.01 | wind | 7 | 270 | < th | dose independent | rect. | 16 | 11 |
| 306 | 267.12 | wind | 5 | 90 | < th | dose independent | rect. | 7 | 23 |
| 321 | 267.24 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 15 |
| 326 | 267.26 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 10 |
| 333 | 267.31 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 8 |
| 336 | 267.31 | wind | 7 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 348 | 267.43 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 17 |
| 361 | 267.49 | wind | 7 | 720 | < th | dose independent | rect. | 8 | 12 |
| 396 | 267.73 | wind | 7 | 720 | < th | dose independent | rect. | 10 | 18 |
| 404 | 267.81 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 7 |
| 413 | 267.85 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 16 |
| 457 | 268.10 | wind | 7 | 720 | < th | dose independent | rect. | 13 | 15 |
| 500 | 268.37 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 15 |
| 542 | 268.60 | wind | 7 | 10 | > th | dose independent | sin | 12 | NA |
| 573 | 268.75 | wind | 7 | 720 | < th | dose independent | rect. | 10 | 10 |
| 588 | 268.80 | wind | 9 | 720 | < th | dose independent | rect. | 3 | 17 |
| 680 | 269.14 | wind | 7 | 720 | > th | dose dependent | rect. | 15 | 7 |
| 708 | 269.25 | wind | 9 | 90 | < th | dose dependent | sin | 17 | NA |
| 724 | 269.29 | wind | 7 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 784 | 269.50 | temperature | 20 | 10 | > th | dose independent | sin | 13 | NA |
| 796 | 269.55 | wind | 7 | 10 | < th | dose independent | rect. | 8 | 14 |
| 840 | 269.77 | wind | 7 | 720 | < th | dose independent | rect. | 15 | 14 |
| 847 | 269.78 | temperature | 25 | 90 | < th | dose dependent | rect. | 16 | 11 |
| 882 | 269.91 | temperature | 20 | 90 | > th | dose independent | sin | 15 | NA |
| 924 | 270.04 | wind | 9 | 720 | > th | dose independent | rect. | 15 | 2 |
| 938 | 270.06 | wind | 9 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 955 | 270.10 | wind | 5 | 90 | < th | dose independent | rect. | 18 | 11 |
| 967 | 270.13 | wind | 7 | 720 | < th | dose independent | rect. | 21 | 23 |
| 971 | 270.14 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 22 |
| 995 | 270.22 | wind | 7 | 720 | < th | dose independent | rect. | 23 | 21 |