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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0783700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to EF-hand Ca2+-binding protein CCD1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.94 (0.0552) R2 : 0.195
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.6 (0.257) R2dC : 0.701 R2C : -0.484
β3 : 2.5 (0.253) R2dE : 0.67 R2E : -0.525
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.329 (0.116) R2dN8 : 0.0185 R2N8 : 0.000734
σ : 1.03
deviance : 489.22
__
_____
C
peak time of C : 0.579
E
wheather : temperature
threshold : 1.31
memory length : 13
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 5.92
open length of G : 14.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
484.17 1.03 3.94 -0.0508 2.49 2.48 -0.606 0.753 -0.341 0.59 6.039 12 5.93 14.2
483.14 1.02 3.93 -0.0346 2.61 2.44 -1.12 -- -0.327 0.566 -1.473 13 5.92 14.2
483.59 1.02 3.92 0.0203 2.62 2.52 -- 1.32 -0.306 0.66 2.04 16 5.92 14.1
489.24 1.03 3.94 -0.0397 2.61 2.52 -- -- -0.334 0.599 1.82 14 5.92 14.1
560.15 1.1 3.83 0.131 -- 1.23 -- 1.56 -0.0721 -- 29.3 451 6.05 14
565.39 1.11 3.88 0.16 0.824 -- -0.437 -- -0.16 20.7 -- -- -- --
565.84 1.11 3.88 0.176 0.832 -- -- -- -0.158 20.5 -- -- -- --
560.77 1.1 3.84 0.026 -- 1.4 -- -- -0.0724 -- 29.48 437 6.33 14.4
489.22 1.03 3.94 -- 2.6 2.5 -- -- -0.329 0.579 1.31 13 5.92 14.1
604.5 1.15 3.86 0.172 -- -- -- -- -0.167 -- -- -- -- --
566.66 1.11 3.89 -- 0.831 -- -- -- -0.178 20.5 -- -- -- --
560.78 1.1 3.84 -- -- 1.41 -- -- -0.075 -- 29.47 437 5.24 16.4
605.28 1.15 3.86 -- -- -- -- -- -0.186 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 491.98 temperature 10.0 10 > th dose dependent rect. 6 14
3 493.73 temperature 20.0 30 > th dose independent rect. 6 14
5 494.43 temperature 10.0 270 > th dose dependent rect. 13 19
8 496.10 wind 7.0 10 < th dose independent rect. 20 10
15 498.13 temperature 10.0 270 > th dose dependent rect. 15 16
17 498.56 radiation 30.0 10 < th dose dependent rect. 20 10
29 500.02 precipitation 0.1 10 < th dose independent rect. 6 14
30 500.02 precipitation 0.1 10 < th dose dependent rect. 6 14
35 500.51 precipitation 0.1 10 < th dose independent rect. 20 10
36 500.51 precipitation 0.1 10 < th dose dependent rect. 20 10
37 500.61 temperature 10.0 10 > th dose independent rect. 20 10
38 500.61 temperature 30.0 10 < th dose independent rect. 20 10
39 500.61 humidity 50.0 10 > th dose independent rect. 20 10
42 500.61 atmosphere 995.0 10 > th dose independent rect. 20 10
43 500.61 radiation 20.0 10 < th dose independent rect. 20 10
46 500.61 temperature 10.0 10 > th dose independent rect. 6 14
48 500.61 atmosphere 1015.0 10 < th dose independent rect. 6 14
53 501.04 temperature 20.0 90 > th dose independent rect. 16 17
63 502.17 wind 9.0 10 < th dose independent rect. 6 14
81 502.70 temperature 10.0 10 > th dose dependent rect. 17 17
86 503.40 temperature 10.0 1440 > th dose independent rect. 21 10
89 503.40 temperature 30.0 1440 < th dose independent rect. 21 10
93 503.40 humidity 50.0 1440 > th dose independent rect. 21 10
98 503.40 atmosphere 995.0 1440 > th dose independent rect. 21 10
99 503.40 radiation 40.0 1440 < th dose independent rect. 21 10
103 503.40 temperature 10.0 1440 > th dose independent rect. 7 14
109 503.64 temperature 20.0 270 > th dose independent rect. 13 18
119 504.78 radiation 10.0 270 < th dose independent rect. 5 2
120 504.78 temperature 20.0 90 > th dose independent rect. 13 21
127 505.35 temperature 20.0 10 > th dose independent rect. 17 17
141 506.37 atmosphere 1000.0 10 > th dose independent rect. 17 17
145 506.49 temperature 10.0 270 > th dose dependent rect. 3 17
146 506.57 atmosphere 1015.0 270 < th dose dependent rect. 12 8
149 506.78 wind 1.0 270 > th dose independent rect. 7 8
153 506.83 temperature 30.0 90 < th dose dependent rect. 10 19
161 507.17 radiation 40.0 90 < th dose independent rect. 12 22
169 507.79 temperature 10.0 10 > th dose dependent rect. 13 21
170 507.83 temperature 30.0 270 < th dose independent rect. 8 7
174 508.06 atmosphere 1000.0 270 > th dose independent rect. 5 2
181 508.31 atmosphere 995.0 270 > th dose independent rect. 7 8
187 508.58 temperature 30.0 270 < th dose independent rect. 8 19
194 508.85 wind 1.0 10 > th dose independent rect. 6 14
196 508.89 wind 1.0 270 > th dose independent rect. 8 5
199 508.97 radiation 40.0 270 < th dose independent rect. 15 16
202 509.03 radiation 40.0 270 < th dose independent rect. 13 19
211 509.29 temperature 30.0 90 < th dose independent rect. 10 19
212 509.36 temperature 10.0 270 > th dose independent rect. 7 8
213 509.36 atmosphere 1015.0 270 < th dose independent rect. 7 8
214 509.36 temperature 10.0 270 > th dose independent rect. 15 16
217 509.39 precipitation 0.1 270 < th dose independent rect. 7 8
218 509.39 precipitation 0.1 270 < th dose dependent rect. 7 8
226 509.48 atmosphere 995.0 90 > th dose dependent rect. 10 6
227 509.50 radiation 40.0 30 < th dose independent rect. 6 14
228 509.53 temperature 30.0 270 < th dose independent rect. 7 21
229 509.56 atmosphere 995.0 10 > th dose independent rect. 10 7
236 509.72 wind 9.0 10 < th dose dependent rect. 20 10
238 509.73 atmosphere 995.0 10 > th dose dependent rect. 10 7
250 510.15 temperature 30.0 10 < th dose independent rect. 10 20
255 510.26 temperature 30.0 90 < th dose independent rect. 10 6
267 510.30 temperature 10.0 270 > th dose dependent rect. 12 10
269 510.34 radiation 1.0 90 < th dose dependent rect. 20 21
271 510.37 temperature 30.0 10 < th dose dependent rect. 11 19
283 510.55 wind 9.0 270 < th dose independent rect. 7 8
289 510.71 temperature 30.0 270 < th dose independent rect. 8 5
296 510.83 atmosphere 1000.0 10 > th dose independent rect. 6 4
298 510.86 radiation 1.0 90 < th dose independent rect. 20 21
318 511.15 temperature 10.0 270 > th dose dependent rect. 12 8
319 511.16 wind 9.0 270 < th dose independent rect. 15 16
326 511.23 atmosphere 1005.0 90 > th dose independent rect. 10 19
332 511.33 atmosphere 1000.0 90 > th dose independent rect. 5 5
334 511.34 temperature 10.0 270 > th dose independent rect. 8 5
335 511.34 atmosphere 995.0 270 > th dose independent rect. 8 5
336 511.34 atmosphere 1015.0 270 < th dose independent rect. 8 5
337 511.34 temperature 10.0 270 > th dose independent rect. 13 19
341 511.37 precipitation 0.1 270 < th dose independent rect. 8 5
342 511.37 precipitation 0.1 270 < th dose dependent rect. 8 5
363 511.50 radiation 20.0 1440 < th dose independent rect. 21 9
378 511.56 radiation 30.0 30 < th dose independent rect. 13 7
383 511.61 precipitation 0.1 270 < th dose independent rect. 15 16
384 511.61 precipitation 0.1 270 < th dose dependent rect. 15 16
394 511.80 humidity 80.0 270 > th dose independent rect. 5 2
398 511.88 atmosphere 995.0 90 > th dose independent rect. 10 6
402 512.03 humidity 50.0 270 > th dose independent rect. 7 22
404 512.12 wind 9.0 270 < th dose independent rect. 8 5
434 512.53 wind 1.0 10 > th dose independent rect. 10 7
436 512.56 atmosphere 1015.0 30 < th dose dependent rect. 13 7
439 512.58 atmosphere 1015.0 10 < th dose independent rect. 17 17
441 512.60 radiation 1.0 270 > th dose independent rect. 7 8
452 512.69 temperature 10.0 10 > th dose independent rect. 10 7
454 512.69 temperature 20.0 270 > th dose independent rect. 13 7
455 512.69 atmosphere 1015.0 10 < th dose independent rect. 10 7
456 512.69 precipitation 0.1 10 < th dose independent rect. 10 7
457 512.69 temperature 10.0 10 > th dose independent rect. 17 17
458 512.69 precipitation 0.1 10 < th dose dependent rect. 10 7
466 512.79 wind 1.0 270 > th dose independent rect. 7 21
468 512.84 radiation 1.0 270 > th dose independent rect. 8 5
472 512.85 atmosphere 995.0 10 > th dose independent rect. 6 14
475 512.87 wind 9.0 270 < th dose independent rect. 13 19
480 512.90 temperature 10.0 10 > th dose dependent rect. 6 17
482 512.93 atmosphere 1015.0 270 < th dose independent rect. 13 19
507 513.16 wind 9.0 10 < th dose independent rect. 10 7
509 513.18 atmosphere 995.0 270 > th dose dependent rect. 5 2
510 513.20 precipitation 0.1 270 < th dose independent rect. 13 19
511 513.20 precipitation 0.1 270 < th dose dependent rect. 13 19
519 513.31 atmosphere 1015.0 270 < th dose independent rect. 15 16
522 513.32 humidity 50.0 270 > th dose independent rect. 7 8
531 513.39 atmosphere 1005.0 270 > th dose independent rect. 8 19
537 513.44 wind 1.0 270 > th dose independent rect. 4 3
540 513.48 atmosphere 1010.0 10 < th dose independent rect. 20 10
541 513.48 atmosphere 995.0 90 > th dose dependent rect. 10 19
547 513.56 humidity 70.0 270 > th dose dependent rect. 5 2
552 513.61 humidity 50.0 270 > th dose independent rect. 8 5
563 513.69 atmosphere 995.0 10 > th dose dependent rect. 6 4
577 513.93 radiation 40.0 10 < th dose independent rect. 17 17
584 514.01 humidity 50.0 10 > th dose dependent rect. 20 10
588 514.04 radiation 1.0 90 < th dose independent sin 11 NA
594 514.11 wind 9.0 10 < th dose independent rect. 17 17
607 514.32 radiation 10.0 270 < th dose dependent rect. 5 2
608 514.32 atmosphere 995.0 270 > th dose dependent rect. 8 7
613 514.33 radiation 40.0 30 < th dose dependent rect. 6 14
621 514.39 atmosphere 1000.0 270 > th dose independent rect. 3 5
636 514.44 temperature 30.0 270 < th dose dependent rect. 8 19
639 514.46 atmosphere 995.0 90 > th dose dependent rect. 5 5
647 514.57 temperature 30.0 10 < th dose dependent rect. 20 10
654 514.62 atmosphere 1015.0 90 < th dose independent rect. 16 18
659 514.65 temperature 20.0 30 > th dose independent rect. 13 7
692 514.91 temperature 10.0 270 > th dose independent rect. 9 3
693 514.91 atmosphere 995.0 270 > th dose independent rect. 9 3
694 514.91 atmosphere 1015.0 270 < th dose independent rect. 9 3
695 514.91 temperature 10.0 270 > th dose independent rect. 12 21
701 514.93 precipitation 0.1 270 < th dose independent rect. 9 3
702 514.93 precipitation 0.1 270 < th dose dependent rect. 9 3
706 514.97 temperature 10.0 90 > th dose independent rect. 10 6
707 514.97 atmosphere 1015.0 90 < th dose independent rect. 10 6
715 515.09 atmosphere 1005.0 90 > th dose independent rect. 10 7
717 515.10 precipitation 0.1 90 < th dose independent rect. 10 6
718 515.10 precipitation 0.1 90 < th dose dependent rect. 10 6
723 515.14 precipitation 0.1 10 < th dose independent rect. 17 17
725 515.14 precipitation 0.1 10 < th dose dependent rect. 17 17
737 515.17 temperature 10.0 270 > th dose dependent rect. 2 21
738 515.18 humidity 80.0 270 > th dose independent rect. 3 5
753 515.33 temperature 20.0 90 > th dose independent rect. 13 10
764 515.43 radiation 1.0 270 > th dose independent rect. 9 3
782 515.52 atmosphere 995.0 10 > th dose dependent rect. 10 20
795 515.61 radiation 1.0 90 < th dose dependent sin 11 NA
836 515.89 temperature 10.0 30 > th dose dependent rect. 13 7
853 516.01 radiation 1.0 270 > th dose independent rect. 13 18
900 516.41 radiation 1.0 270 < th dose dependent rect. 18 10
910 516.49 atmosphere 995.0 270 > th dose independent rect. 13 19
923 516.57 temperature 10.0 270 > th dose dependent rect. 5 2
931 516.63 temperature 30.0 270 < th dose independent rect. 18 10
953 516.80 humidity 50.0 10 > th dose independent rect. 17 17
968 516.91 radiation 1.0 270 > th dose independent rect. 12 20