BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0668200 Os06g0668200|AK070705
(401 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0668200 Similar to Phosphoglycerate kinase, cytosolic ... 796 0.0
Os02g0169300 Similar to Phosphoglycerate kinase, cytosolic ... 738 0.0
AK100371 663 0.0
Os01g0800266 Phosphoglycerate kinase family protein 439 e-123
Os05g0496200 Similar to 3-phosphoglycerate kinase (Fragment) 293 2e-79
AK110279 169 3e-42
>Os06g0668200 Similar to Phosphoglycerate kinase, cytosolic (EC 2.7.2.3)
Length = 401
Score = 796 bits (2055), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/401 (100%), Positives = 401/401 (100%)
Query: 1 MASKRSVGTLTESDLKGKKVFLRADLNVPLDDSQKITDDTRIRASVPTIKFLMGKGAKVI 60
MASKRSVGTLTESDLKGKKVFLRADLNVPLDDSQKITDDTRIRASVPTIKFLMGKGAKVI
Sbjct: 1 MASKRSVGTLTESDLKGKKVFLRADLNVPLDDSQKITDDTRIRASVPTIKFLMGKGAKVI 60
Query: 61 LASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGEEVQKLAATLPDGGVLLLEN 120
LASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGEEVQKLAATLPDGGVLLLEN
Sbjct: 61 LASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGEEVQKLAATLPDGGVLLLEN 120
Query: 121 VRFYKEEEKNDPEFANKLASVADLYVNDAFGTAHRAHASTEGVTKYLRPSVAGFLMQKEL 180
VRFYKEEEKNDPEFANKLASVADLYVNDAFGTAHRAHASTEGVTKYLRPSVAGFLMQKEL
Sbjct: 121 VRFYKEEEKNDPEFANKLASVADLYVNDAFGTAHRAHASTEGVTKYLRPSVAGFLMQKEL 180
Query: 181 DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDILILGGGMIYTFYKAQGYAVGK 240
DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDILILGGGMIYTFYKAQGYAVGK
Sbjct: 181 DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDILILGGGMIYTFYKAQGYAVGK 240
Query: 241 SLVEEDKLELATSLIEKAKSKGVSLLLPTDIVVADKFAADAESKTVPASAIPDGWMGLDI 300
SLVEEDKLELATSLIEKAKSKGVSLLLPTDIVVADKFAADAESKTVPASAIPDGWMGLDI
Sbjct: 241 SLVEEDKLELATSLIEKAKSKGVSLLLPTDIVVADKFAADAESKTVPASAIPDGWMGLDI 300
Query: 301 GPDSIKTFSETLDTTKTVIWNGPMGVFEFEKFAAGTDAIAKKLADITAKGVTTIIGGGDS 360
GPDSIKTFSETLDTTKTVIWNGPMGVFEFEKFAAGTDAIAKKLADITAKGVTTIIGGGDS
Sbjct: 301 GPDSIKTFSETLDTTKTVIWNGPMGVFEFEKFAAGTDAIAKKLADITAKGVTTIIGGGDS 360
Query: 361 VAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALNDA 401
VAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALNDA
Sbjct: 361 VAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALNDA 401
>Os02g0169300 Similar to Phosphoglycerate kinase, cytosolic (EC 2.7.2.3)
Length = 402
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/402 (91%), Positives = 390/402 (97%), Gaps = 1/402 (0%)
Query: 1 MASKRSVGTLTESDLKGKKVFLRADLNVPLDDSQKITDDTRIRASVPTIKFLMGKGAKVI 60
MA+KRSVGTL E+DL+GKKVF+RADLNVPLDD+QKITDDTRIRASVPT+KFL+ KGAKVI
Sbjct: 1 MATKRSVGTLGEADLRGKKVFVRADLNVPLDDAQKITDDTRIRASVPTVKFLLEKGAKVI 60
Query: 61 LASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGEEVQKLAATLPDGGVLLLEN 120
LASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGEEV+KLAA LP+GGVLLLEN
Sbjct: 61 LASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGEEVEKLAAALPEGGVLLLEN 120
Query: 121 VRFYKEEEKNDPEFANKLASVADLYVNDAFGTAHRAHASTEGVTKYLRPSVAGFLMQKEL 180
VRFYKEEEKNDPEFA KLA+VADLYVNDAFGTAHRAHASTEGVTK+L+P+VAGFLMQKEL
Sbjct: 121 VRFYKEEEKNDPEFAKKLAAVADLYVNDAFGTAHRAHASTEGVTKFLKPAVAGFLMQKEL 180
Query: 181 DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDILILGGGMIYTFYKAQGYAVGK 240
DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVD+LILGGGMI+TFYKAQGYAVGK
Sbjct: 181 DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDVLILGGGMIFTFYKAQGYAVGK 240
Query: 241 SLVEEDKLELATSLIEKAKSKGVSLLLPTDIVVADKFAADAESKTVPASAIPDGWMGLDI 300
SLVEEDKLELATSLIEKAK+KGVSLLLPTD+VVADKFAADAESKTV ASAIPDGWMGLD+
Sbjct: 241 SLVEEDKLELATSLIEKAKAKGVSLLLPTDVVVADKFAADAESKTVAASAIPDGWMGLDV 300
Query: 301 GPDSIKTFSETLDTTKTVIWNGPMGVFEFEKFAAGTDAIAKKLADI-TAKGVTTIIGGGD 359
GPD+IKT SE LDT T+IWNGPMGVFEFEKFAAGTDAIAKKLAD+ T KG TTIIGGGD
Sbjct: 301 GPDAIKTSSEALDTCNTIIWNGPMGVFEFEKFAAGTDAIAKKLADLTTTKGATTIIGGGD 360
Query: 360 SVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALNDA 401
SVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLAL++A
Sbjct: 361 SVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALDEA 402
>AK100371
Length = 365
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/361 (91%), Positives = 350/361 (96%), Gaps = 1/361 (0%)
Query: 42 IRASVPTIKFLMGKGAKVILASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGE 101
IRASVPT+KFL+ KGAKVILASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGE
Sbjct: 5 IRASVPTVKFLLEKGAKVILASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGE 64
Query: 102 EVQKLAATLPDGGVLLLENVRFYKEEEKNDPEFANKLASVADLYVNDAFGTAHRAHASTE 161
EV+KLAA LP+GGVLLLENVRFYKEEEKNDPEFA KLA+VADLYVNDAFGTAHRAHASTE
Sbjct: 65 EVEKLAAALPEGGVLLLENVRFYKEEEKNDPEFAKKLAAVADLYVNDAFGTAHRAHASTE 124
Query: 162 GVTKYLRPSVAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDILI 221
GVTK+L+P+VAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVD+LI
Sbjct: 125 GVTKFLKPAVAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDVLI 184
Query: 222 LGGGMIYTFYKAQGYAVGKSLVEEDKLELATSLIEKAKSKGVSLLLPTDIVVADKFAADA 281
LGGGMI+TFYKAQGYAVGKSLVEEDKLELATSLIEKAK+KGVSLLLPTD+VVADKFAADA
Sbjct: 185 LGGGMIFTFYKAQGYAVGKSLVEEDKLELATSLIEKAKAKGVSLLLPTDVVVADKFAADA 244
Query: 282 ESKTVPASAIPDGWMGLDIGPDSIKTFSETLDTTKTVIWNGPMGVFEFEKFAAGTDAIAK 341
ESKTV ASAIPDGWMGLD+GPD+IKT SE LDT T+IWNGPMGVFEFEKFAAGTDAIAK
Sbjct: 245 ESKTVAASAIPDGWMGLDVGPDAIKTSSEALDTCNTIIWNGPMGVFEFEKFAAGTDAIAK 304
Query: 342 KLADI-TAKGVTTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALND 400
KLAD+ T KG TTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLAL++
Sbjct: 305 KLADLTTTKGATTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALDE 364
Query: 401 A 401
A
Sbjct: 365 A 365
>Os01g0800266 Phosphoglycerate kinase family protein
Length = 385
Score = 439 bits (1130), Expect = e-123, Method: Compositional matrix adjust.
Identities = 238/399 (59%), Positives = 277/399 (69%), Gaps = 86/399 (21%)
Query: 3 SKRSVGTLTESDLKGKKVFLRADLNVPLDDSQKITDDTRIRASVPTIKFLMGKGAKVILA 62
+K+SVG L +DL+GK+V LRADLNVPLD SQ ITDDTR+ A++PTIK L+G GAKVIL
Sbjct: 73 AKKSVGDLAAADLEGKRVLLRADLNVPLDASQNITDDTRVIAAIPTIKHLIGNGAKVILC 132
Query: 63 SHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGEEVQKLAATLPDGGVLLLENVR 122
SHLGRPKG+TPK+SL PLVPRLSELLG+ V A+D IG EV+K + LP+G VLLLENVR
Sbjct: 133 SHLGRPKGITPKFSLAPLVPRLSELLGIQVQKADDVIGPEVEKSVSVLPNGSVLLLENVR 192
Query: 123 FYKEEEKNDPEFANKLASVADLYVNDAFGTAHRAHASTEGVTKYLRPSVAGFLMQKELDY 182
FYKEEEKNDPEFA KLAS+ADLY ELDY
Sbjct: 193 FYKEEEKNDPEFAKKLASLADLY---------------------------------ELDY 219
Query: 183 LVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDILILGGGMIYTFYKAQGYAVGKSL 242
LVGAV+NPK+PFAAIVGGSKVS+KIGVIESLL K DIL+LGGGMI+TFYKAQG+ VG SL
Sbjct: 220 LVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGFPVGASL 279
Query: 243 VEEDKLELATSLIEKAKSKGVSLLLPTDIVVADKFAADAESKTVPASAIPDGWMGLDIGP 302
VE+DKLELATSL+ KAK KGVSL+LPTD++VADKFA +A + +
Sbjct: 280 VEDDKLELATSLLAKAKEKGVSLMLPTDVIVADKFAPEANCQAI---------------- 323
Query: 303 DSIKTFSETLDTTKTVIWNGPMGVFEFEKFAAGTDAIAKKLADITAKGVTTIIGGGDSVA 362
AKKLA+++ KGVTTIIGG DSVA
Sbjct: 324 -------------------------------------AKKLAELSGKGVTTIIGGKDSVA 346
Query: 363 AVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALNDA 401
AVEK G+A+ MSHISTGGGASLELLEGK LPGV+AL++A
Sbjct: 347 AVEKVGVANVMSHISTGGGASLELLEGKELPGVVALDEA 385
>Os05g0496200 Similar to 3-phosphoglycerate kinase (Fragment)
Length = 181
Score = 293 bits (749), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 142/176 (80%), Positives = 162/176 (92%)
Query: 226 MIYTFYKAQGYAVGKSLVEEDKLELATSLIEKAKSKGVSLLLPTDIVVADKFAADAESKT 285
MI+TFYKAQG +VG SLVEEDKLELATSL+ KAK KGVSLLLP+D+++ADKFA DA S+
Sbjct: 1 MIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKEKGVSLLLPSDVIIADKFAPDANSQV 60
Query: 286 VPASAIPDGWMGLDIGPDSIKTFSETLDTTKTVIWNGPMGVFEFEKFAAGTDAIAKKLAD 345
VPASAIPDGWMGLDIGPDS+ +FS TL+TT+TVIWNGPMGVFEF+KFA GT+AIAKKLAD
Sbjct: 61 VPASAIPDGWMGLDIGPDSVASFSSTLETTQTVIWNGPMGVFEFDKFAVGTEAIAKKLAD 120
Query: 346 ITAKGVTTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALNDA 401
++ KGVTTIIGGGDSVAAVEK G+AD MSHISTGGGASLELLEGK LPGV+AL++A
Sbjct: 121 LSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVIALDEA 176
>AK110279
Length = 844
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/352 (30%), Positives = 176/352 (50%), Gaps = 30/352 (8%)
Query: 73 PKY-SLKPLVPRLSELL--GVDVVMANDCIG--EEVQKLAATLPDGGVLLLENVRFYK-- 125
P++ S +PL L ++L V A DC+ ++V+KL G VL+LEN+RFYK
Sbjct: 88 PRHLSTEPLAQLLRKILPETCTVDFAPDCLAAMDQVKKLQ----RGCVLVLENLRFYKAE 143
Query: 126 --EEEKNDPEFANKLASVADLYVNDAFGTAHRAHASTEGVTKYLRPSVAGFLMQKELDYL 183
E + E A L D++VND F T H A+T + K LR V G LM +E+ Y
Sbjct: 144 LSERAEERAEMAAVLERYTDVFVNDVFATLHLRAAATVELPKLLRHGVCGSLMAQEVTYF 203
Query: 184 VGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDILILGGGMIYTFYKAQGYAVGK--- 240
+ NP++P ++G + K+ ++E+L+ KVD + + + F + +G +VGK
Sbjct: 204 SQVLTNPQRPLTLVIGSVHIEEKMRLLEALIRKVDKVPISCAVAIPFLQVKGISVGKLSP 263
Query: 241 -------SLVEED----KLELATSLIEKAKSKGVSLLLPTDIVVADKFAADAESKTVPAS 289
++ ED + A ++ A+ V ++LP D V P +
Sbjct: 264 NICDTAGHIIWEDPSTSPQDFARKIMRLAERYNVKIVLPEDFVCNRTIEPTRFPTVTPTN 323
Query: 290 AIPDGWMGLDIGPDSIKTFSETLDTTKTVIWNGPMGVFEFEKFAAGTDAIAKKLADITAK 349
+P +DIGP +I+ F+ + + TV W G MG + + GT AIA +
Sbjct: 324 RVPADLYIVDIGPKTIQRFTAEISDSHTVFWTGRMGCADKADYTNGTTAIAIAVGH---S 380
Query: 350 GVTTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALNDA 401
T++GG ++V AV AG+ D ++H++TG + L +LEG L + AL+DA
Sbjct: 381 NCVTVVGGKNTVQAVRTAGVEDSINHMTTGPNSMLRVLEGTPLAALNALSDA 432
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.134 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,211,361
Number of extensions: 559836
Number of successful extensions: 1091
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1087
Number of HSP's successfully gapped: 8
Length of query: 401
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 298
Effective length of database: 11,657,759
Effective search space: 3474012182
Effective search space used: 3474012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)