Os05g0496200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 3-phosphoglycerate kinase (Fragment).
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Os05g0496200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 3-phosphoglycerate kinase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.18 | 0.37 | 15.4 | -1.21 | 0.117 | 0.59 | 0.946 | 2.12 | -0.905 | 5.61 | 0.3361 | 4450 | -- | -- |
| 59.23 | 0.358 | 15.4 | -1.4 | 0.0658 | 0.623 | 0.655 | -- | -0.999 | 5.35 | 1.735 | 28017 | -- | -- |
| 64.37 | 0.374 | 15.4 | -1.21 | 0.123 | 0.578 | -- | 2.04 | -0.906 | 5.36 | 0.3693 | 4453 | -- | -- |
| 60.03 | 0.361 | 15.4 | -1.32 | 0.098 | 0.688 | -- | -- | -1.07 | 5.88 | 14.41 | 28621 | -- | -- |
| 65.16 | 0.376 | 15.4 | -1.21 | -- | 0.574 | -- | 2.02 | -0.905 | -- | 0.3685 | 4453 | -- | -- |
| 71.48 | 0.396 | 15.3 | -1.43 | 0.109 | -- | 0.826 | -- | -0.855 | 5.8 | -- | -- | -- | -- |
| 73.15 | 0.401 | 15.3 | -1.42 | 0.114 | -- | -- | -- | -0.858 | 5.41 | -- | -- | -- | -- |
| 60.55 | 0.362 | 15.4 | -1.31 | -- | 0.692 | -- | -- | -1.06 | -- | 14.23 | 28620 | -- | -- |
| 102.68 | 0.472 | 15.3 | -- | 0.00923 | 0.836 | -- | -- | -0.979 | 16.6 | 15.35 | 22456 | -- | -- |
| 73.82 | 0.401 | 15.3 | -1.42 | -- | -- | -- | -- | -0.855 | -- | -- | -- | -- | -- |
| 126.39 | 0.526 | 15.3 | -- | 0.0916 | -- | -- | -- | -0.7 | 6.04 | -- | -- | -- | -- |
| 102.09 | 0.471 | 15.4 | -- | -- | 0.878 | -- | -- | -0.938 | -- | 15.85 | 22824 | -- | -- |
| 126.82 | 0.526 | 15.3 | -- | -- | -- | -- | -- | -0.698 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.57 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 4 | 58.06 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 5 | 58.12 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 6 | 58.12 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 13 | 58.56 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 19 | 58.67 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 23 | 58.78 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 27 | 58.83 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 28 | 58.83 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 60 | 59.23 | wind | 1.0 | 43200 | < th | dose independent | rect. | 1 | 2 |
| 66 | 59.29 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 86 | 59.42 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 4 |
| 111 | 59.54 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 120 | 59.59 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 123 | 59.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 14 |
| 124 | 59.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 125 | 59.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 133 | 59.66 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 135 | 59.67 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 141 | 59.71 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 164 | 59.79 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 283 | 60.23 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 290 | 60.24 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 21 | NA |
| 300 | 60.30 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 8 |
| 301 | 60.31 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 10 |
| 307 | 60.32 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 2 |
| 322 | 60.38 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 337 | 60.39 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 341 | 60.41 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 368 | 60.47 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 384 | 60.51 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 385 | 60.51 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 393 | 60.53 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 400 | 60.54 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 405 | 60.55 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 442 | 60.62 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 501 | 60.73 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 534 | 60.80 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 550 | 60.81 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 15 | 16 |
| 581 | 60.84 | humidity | 80.0 | 14400 | > th | dose independent | sin | 17 | NA |
| 699 | 60.96 | humidity | 70.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 700 | 60.96 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 782 | 61.02 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 810 | 61.04 | wind | 1.0 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 814 | 61.05 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 824 | 61.06 | humidity | 80.0 | 14400 | < th | dose independent | sin | 17 | NA |
| 828 | 61.06 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 850 | 61.07 | wind | 5.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 903 | 61.12 | humidity | 70.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 915 | 61.12 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 22 | 19 |
| 956 | 61.17 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 12 |
| 991 | 61.21 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 22 | 16 |