BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0496200 Os05g0496200|AK062214
         (181 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56190.1  | chr1:21028403-21030454 FORWARD LENGTH=479          313   5e-86
AT1G79550.1  | chr1:29924347-29926295 REVERSE LENGTH=402          308   1e-84
AT3G12780.1  | chr3:4061127-4063140 REVERSE LENGTH=482            307   3e-84

>AT1G56190.1 | chr1:21028403-21030454 FORWARD LENGTH=479
          Length = 478

 Score =  313 bits (801), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 156/181 (86%), Positives = 169/181 (93%)

Query: 1   MIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKEKGVSLLLPSDVIIADKFAPDANSQV 60
           MIFTFYKAQGLSVGSSLVEEDKLELAT+LLAKAK +GVSLLLP+DV+IADKFAPDANS++
Sbjct: 298 MIFTFYKAQGLSVGSSLVEEDKLELATTLLAKAKARGVSLLLPTDVVIADKFAPDANSKI 357

Query: 61  VPASAIPDGWMGLDIGPDSVASFSSTLETTQTVIWNGPMGVFEFDKFAVGTEAIAKKLAD 120
           VPASAIPDGWMGLDIGPDSV +F+  L+TTQTVIWNGPMGVFEF+KFA GTEA+A KLA+
Sbjct: 358 VPASAIPDGWMGLDIGPDSVKTFNEALDTTQTVIWNGPMGVFEFEKFAKGTEAVANKLAE 417

Query: 121 LSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVIALDEAVTVA 180
           LS KGVTTIIGGGDSVAAVEKVGVA VMSHISTGGGASLELLEGK LPGV+ALDEA  V 
Sbjct: 418 LSKKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKVLPGVVALDEATPVT 477

Query: 181 V 181
           V
Sbjct: 478 V 478



>AT1G79550.1 | chr1:29924347-29926295 REVERSE LENGTH=402
          Length = 401

 Score =  308 bits (789), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 150/176 (85%), Positives = 167/176 (94%)

Query: 1   MIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKEKGVSLLLPSDVIIADKFAPDANSQV 60
           MIFTFYKAQGLSVGSSLVEEDKL+LA SL+ KAK KGVSLLLP+DV+IADKFAPDANS++
Sbjct: 226 MIFTFYKAQGLSVGSSLVEEDKLDLAKSLMEKAKAKGVSLLLPTDVVIADKFAPDANSKI 285

Query: 61  VPASAIPDGWMGLDIGPDSVASFSSTLETTQTVIWNGPMGVFEFDKFAVGTEAIAKKLAD 120
           VPA+AIPDGWMGLDIGPDS+ +FS  L+TT+T+IWNGPMGVFEFDKFA GTEA+AK+LA+
Sbjct: 286 VPATAIPDGWMGLDIGPDSIKTFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAVAKQLAE 345

Query: 121 LSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVIALDEA 176
           LSGKGVTTIIGGGDSVAAVEKVG+AD MSHISTGGGASLELLEGK LPGV+ALDEA
Sbjct: 346 LSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDEA 401



>AT3G12780.1 | chr3:4061127-4063140 REVERSE LENGTH=482
          Length = 481

 Score =  307 bits (786), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 154/181 (85%), Positives = 166/181 (91%)

Query: 1   MIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKEKGVSLLLPSDVIIADKFAPDANSQV 60
           MIFTFYKAQGLSVGSSLVEEDKLELAT LLAKAK KGVSLLLP+DV++ADKFAPDANS++
Sbjct: 301 MIFTFYKAQGLSVGSSLVEEDKLELATELLAKAKAKGVSLLLPTDVVVADKFAPDANSKI 360

Query: 61  VPASAIPDGWMGLDIGPDSVASFSSTLETTQTVIWNGPMGVFEFDKFAVGTEAIAKKLAD 120
           VPAS I DGWMGLDIGPDS+ +F+  L+TTQTVIWNGPMGVFE +KFA GTEAIA KLA+
Sbjct: 361 VPASGIEDGWMGLDIGPDSIKTFNEALDTTQTVIWNGPMGVFEMEKFAAGTEAIANKLAE 420

Query: 121 LSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVIALDEAVTVA 180
           LS KGVTTIIGGGDSVAAVEKVGVA VMSHISTGGGASLELLEGK LPGVIALDEA+ V 
Sbjct: 421 LSEKGVTTIIGGGDSVAAVEKVGVAGVMSHISTGGGASLELLEGKVLPGVIALDEAIPVT 480

Query: 181 V 181
           V
Sbjct: 481 V 481



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.132    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,682,787
Number of extensions: 148969
Number of successful extensions: 328
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 3
Length of query: 181
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 89
Effective length of database: 8,584,297
Effective search space: 764002433
Effective search space used: 764002433
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 108 (46.2 bits)