Os06g0668200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphoglycerate kinase, cytosolic (EC 2.7.2.3).
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Os06g0668200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphoglycerate kinase, cytosolic (EC 2.7.2.3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.64 | 0.437 | 10.3 | 0.484 | 0.801 | 2.47 | -1.21 | -3.25 | -0.464 | 4.34 | 23.32 | 279 | -- | -- |
| 90.47 | 0.443 | 10.3 | 1 | 0.732 | 2.2 | -0.452 | -- | -0.314 | 3.83 | 23.12 | 255 | -- | -- |
| 89.21 | 0.44 | 10.3 | 0.566 | 0.82 | 2.5 | -- | -2.56 | -0.426 | 3.79 | 23.43 | 249 | -- | -- |
| 90.68 | 0.444 | 10.3 | 1.02 | 0.754 | 2.23 | -- | -- | -0.315 | 3.41 | 23.2 | 226 | -- | -- |
| 105.5 | 0.478 | 10.3 | 0.929 | -- | 1.72 | -- | -0.383 | -0.295 | -- | 22.3 | 610 | -- | -- |
| 168 | 0.608 | 10.2 | 1.49 | 0.339 | -- | 1.85 | -- | -0.00483 | 18.8 | -- | -- | -- | -- |
| 176.55 | 0.622 | 10.2 | 1.46 | 0.346 | -- | -- | -- | -0.001 | 19.4 | -- | -- | -- | -- |
| 105.42 | 0.478 | 10.3 | 1.07 | -- | 1.67 | -- | -- | -0.259 | -- | 22.56 | 605 | -- | -- |
| 116.17 | 0.502 | 10.3 | -- | 0.877 | 2.51 | -- | -- | -0.471 | 3.5 | 22.96 | 226 | -- | -- |
| 182.95 | 0.632 | 10.2 | 1.45 | -- | -- | -- | -- | -0.00658 | -- | -- | -- | -- | -- |
| 232.68 | 0.714 | 10.3 | -- | 0.334 | -- | -- | -- | -0.164 | 19.7 | -- | -- | -- | -- |
| 118.57 | 0.507 | 10.3 | -- | -- | 2.29 | -- | -- | -0.501 | -- | 10.05 | 5025 | -- | -- |
| 238.71 | 0.721 | 10.2 | -- | -- | -- | -- | -- | -0.168 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.92 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 6 | 86.51 | temperature | 20 | 720 | > th | dose dependent | sin | 2 | NA |
| 15 | 87.12 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 34 | 88.04 | temperature | 25 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 48 | 88.66 | temperature | 25 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 73 | 89.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 113 | 90.03 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 182 | 90.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 255 | 90.83 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 298 | 91.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 477 | 91.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 15 |
| 506 | 91.97 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 576 | 92.19 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 694 | 92.63 | temperature | 30 | 720 | < th | dose dependent | sin | 0 | NA |
| 718 | 92.73 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 760 | 92.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 764 | 92.87 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 770 | 92.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 797 | 93.03 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 858 | 93.23 | temperature | 15 | 1440 | > th | dose dependent | rect. | 13 | 7 |