Os02g0169300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phosphoglycerate kinase, cytosolic (EC 2.7.2.3).
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Os02g0169300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phosphoglycerate kinase, cytosolic (EC 2.7.2.3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48 | 0.326 | 14.8 | -0.619 | 0.604 | -0.49 | 0.396 | -0.633 | -0.0543 | 10.7 | 57.58 | 1059 | -- | -- |
| 48.4 | 0.324 | 14.8 | -0.59 | 0.604 | -0.546 | 0.48 | -- | -0.0598 | 10.7 | 56 | 1055 | -- | -- |
| 48.56 | 0.325 | 14.8 | -0.609 | 0.598 | -0.488 | -- | -0.814 | -0.058 | 10.6 | 58.16 | 1071 | -- | -- |
| 49.19 | 0.327 | 14.8 | -0.629 | 0.588 | -0.531 | -- | -- | -0.0768 | 10.7 | 61 | 1080 | -- | -- |
| 63.37 | 0.371 | 14.8 | -0.508 | -- | -0.817 | -- | -0.385 | 0.00999 | -- | 68 | 981 | -- | -- |
| 57.19 | 0.355 | 14.8 | -0.696 | 0.686 | -- | 0.584 | -- | 0.0358 | 10.9 | -- | -- | -- | -- |
| 58.62 | 0.359 | 14.8 | -0.672 | 0.684 | -- | -- | -- | 0.0374 | 10.9 | -- | -- | -- | -- |
| 63.34 | 0.371 | 14.8 | -0.533 | -- | -0.825 | -- | -- | 0.0225 | -- | 68.99 | 981 | -- | -- |
| 57.58 | 0.353 | 14.8 | -- | 0.6 | -0.632 | -- | -- | -0.0257 | 10.6 | 58 | 1084 | -- | -- |
| 87.66 | 0.437 | 14.8 | -0.687 | -- | -- | -- | -- | 0.0329 | -- | -- | -- | -- | -- |
| 70.54 | 0.393 | 14.8 | -- | 0.69 | -- | -- | -- | 0.112 | 10.9 | -- | -- | -- | -- |
| 70.64 | 0.391 | 14.8 | -- | -- | -0.873 | -- | -- | 0.122 | -- | 70 | 982 | -- | -- |
| 100.1 | 0.467 | 14.8 | -- | -- | -- | -- | -- | 0.109 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.33 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 15 |
| 2 | 44.33 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 3 | 44.58 | humidity | 70.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 6 | 45.09 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 7 | 45.24 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 16 |
| 8 | 45.24 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 9 | 45.30 | humidity | 70.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 10 | 45.30 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 14 | 45.39 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 8 |
| 15 | 45.45 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 16 | 45.45 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 17 | 6 |
| 19 | 45.49 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 20 | 45.49 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 23 | 45.49 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 28 | 45.49 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 29 | 45.49 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 31 | 45.49 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 36 | 45.51 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 37 | 45.56 | wind | 9.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 38 | 45.59 | wind | 7.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 39 | 45.63 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 17 |
| 40 | 45.63 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 41 | 45.65 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 46 | 45.78 | wind | 5.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 49 | 45.84 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 7 |
| 52 | 45.90 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 16 | 14 |
| 53 | 45.90 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 16 | 14 |
| 55 | 45.93 | radiation | 1.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 58 | 45.98 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 63 | 46.03 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 16 |
| 70 | 46.11 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 7 |
| 74 | 46.14 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 16 | 9 |
| 77 | 46.22 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 19 | 8 |
| 78 | 46.23 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 9 |
| 80 | 46.23 | wind | 7.0 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 81 | 46.23 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 84 | 46.26 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 93 | 46.33 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 97 | 46.37 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 98 | 46.37 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 9 |
| 99 | 46.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 15 |
| 108 | 46.45 | wind | 7.0 | 30 | < th | dose independent | rect. | 16 | 14 |
| 110 | 46.48 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 118 | 46.53 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 119 | 46.54 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 7 |
| 121 | 46.54 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 7 |
| 122 | 46.54 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 7 |
| 126 | 46.54 | radiation | 1.0 | 10 | < th | dose independent | rect. | 20 | 7 |
| 132 | 46.54 | temperature | 10.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 134 | 46.54 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 3 | 17 |
| 135 | 46.54 | radiation | 1.0 | 270 | < th | dose dependent | sin | 18 | NA |
| 138 | 46.54 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 20 | 7 |
| 148 | 46.59 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 8 |
| 151 | 46.59 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 8 |
| 153 | 46.61 | wind | 9.0 | 10 | < th | dose independent | rect. | 3 | 17 |
| 156 | 46.63 | wind | 3.0 | 30 | < th | dose independent | rect. | 3 | 3 |
| 158 | 46.64 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 20 | 7 |
| 178 | 46.67 | radiation | 1.0 | 270 | > th | dose independent | sin | 18 | NA |
| 180 | 46.67 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 181 | 46.67 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 16 | 3 |
| 182 | 46.67 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 183 | 46.68 | radiation | 1.0 | 270 | < th | dose independent | sin | 18 | NA |
| 188 | 46.68 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 200 | 46.74 | humidity | 70.0 | 720 | < th | dose independent | rect. | 16 | 4 |
| 215 | 46.75 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 17 |
| 256 | 46.83 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 265 | 46.85 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 15 |
| 272 | 46.87 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 3 | 17 |
| 273 | 46.88 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 293 | 46.93 | wind | 9.0 | 10 | < th | dose independent | rect. | 6 | 10 |
| 302 | 46.94 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 3 | 17 |
| 310 | 46.97 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 10 |
| 320 | 46.99 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 7 |
| 321 | 46.99 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 10 |
| 322 | 46.99 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 7 |
| 323 | 46.99 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 326 | 47.00 | wind | 7.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 333 | 47.02 | temperature | 15.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 334 | 47.02 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 15 |
| 336 | 47.03 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 339 | 47.04 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 10 |
| 341 | 47.04 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 6 | 10 |
| 342 | 47.04 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 343 | 47.04 | radiation | 30.0 | 10 | < th | dose independent | rect. | 16 | 14 |
| 359 | 47.08 | radiation | 1.0 | 30 | > th | dose independent | rect. | 6 | 10 |
| 364 | 47.09 | wind | 1.0 | 270 | > th | dose independent | rect. | 10 | 9 |
| 386 | 47.14 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 13 |
| 395 | 47.16 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 15 |
| 402 | 47.18 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 14 |
| 404 | 47.19 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 406 | 47.20 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 441 | 47.26 | wind | 7.0 | 30 | < th | dose dependent | rect. | 3 | 3 |
| 447 | 47.27 | humidity | 60.0 | 720 | > th | dose independent | rect. | 15 | 16 |
| 454 | 47.29 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 17 |
| 456 | 47.29 | wind | 9.0 | 90 | < th | dose dependent | rect. | 16 | 14 |
| 459 | 47.30 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 463 | 47.31 | radiation | 1.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 489 | 47.33 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 16 | 14 |
| 512 | 47.39 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 516 | 47.39 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 519 | 47.39 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 527 | 47.40 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 542 | 47.43 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 7 |
| 544 | 47.43 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 550 | 47.44 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 8 |
| 563 | 47.45 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 9 |
| 564 | 47.46 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 12 |
| 578 | 47.50 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 581 | 47.50 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 585 | 47.50 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 591 | 47.50 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 20 | 8 |
| 592 | 47.50 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 20 | 8 |
| 614 | 47.50 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 16 |
| 628 | 47.52 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 20 | 8 |
| 642 | 47.53 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 660 | 47.56 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 3 |
| 679 | 47.56 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 722 | 47.57 | radiation | 10.0 | 10 | < th | dose independent | rect. | 14 | 16 |
| 748 | 47.61 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 17 |
| 758 | 47.63 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 4 |
| 771 | 47.65 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 10 |
| 779 | 47.67 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 791 | 47.69 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 792 | 47.69 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 793 | 47.69 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 796 | 47.69 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 7 |
| 797 | 47.69 | radiation | 20.0 | 270 | < th | dose independent | rect. | 23 | 7 |
| 803 | 47.69 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 12 |
| 805 | 47.70 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 808 | 47.70 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 816 | 47.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 819 | 47.72 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 20 |
| 821 | 47.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 825 | 47.72 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 828 | 47.73 | humidity | 50.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 829 | 47.73 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 16 |
| 836 | 47.74 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 23 | 7 |
| 846 | 47.75 | radiation | 40.0 | 10 | < th | dose independent | rect. | 3 | 17 |
| 859 | 47.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 9 |
| 862 | 47.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 9 |
| 864 | 47.78 | humidity | 80.0 | 30 | > th | dose independent | rect. | 3 | 3 |
| 871 | 47.79 | temperature | 20.0 | 270 | > th | dose independent | rect. | 10 | 9 |
| 876 | 47.81 | radiation | 1.0 | 270 | < th | dose independent | sin | 6 | NA |
| 878 | 47.81 | wind | 1.0 | 90 | > th | dose independent | rect. | 19 | 8 |
| 885 | 47.82 | temperature | 15.0 | 270 | > th | dose independent | rect. | 19 | 4 |
| 897 | 47.84 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 904 | 47.85 | radiation | 10.0 | 270 | > th | dose independent | rect. | 16 | 1 |
| 908 | 47.85 | wind | 9.0 | 270 | < th | dose dependent | rect. | 14 | 15 |
| 910 | 47.86 | temperature | 25.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 911 | 47.86 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 4 |
| 916 | 47.86 | radiation | 10.0 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 917 | 47.86 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 920 | 47.87 | radiation | 1.0 | 270 | > th | dose independent | sin | 6 | NA |
| 928 | 47.88 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 9 |
| 930 | 47.88 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 15 |
| 953 | 47.91 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 955 | 47.91 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 956 | 47.91 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 959 | 47.91 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 960 | 47.91 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 962 | 47.91 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 971 | 47.91 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 988 | 47.92 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 1000 | 47.93 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 17 |