BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0169300 Os02g0169300|AK070041
(402 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0169300 Similar to Phosphoglycerate kinase, cytosolic ... 714 0.0
Os06g0668200 Similar to Phosphoglycerate kinase, cytosolic ... 666 0.0
AK100371 631 0.0
Os01g0800266 Phosphoglycerate kinase family protein 348 5e-96
Os05g0496200 Similar to 3-phosphoglycerate kinase (Fragment) 209 3e-54
AK110279 132 5e-31
>Os02g0169300 Similar to Phosphoglycerate kinase, cytosolic (EC 2.7.2.3)
Length = 402
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/402 (91%), Positives = 367/402 (91%)
Query: 1 MATKRSVGTLGEADLRGKKVFVRADLNVPLDDAQKITDDTRIRASVPTVKFLLEKGAKVI 60
MATKRSVGTLGEADLRGKKVFVRADLNVPLDDAQKITDDTRIRASVPTVKFLLEKGAKVI
Sbjct: 1 MATKRSVGTLGEADLRGKKVFVRADLNVPLDDAQKITDDTRIRASVPTVKFLLEKGAKVI 60
Query: 61 LASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGEEVEKLAAALPEGGVLLLEN 120
LASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGEEVEKLAAALPEGGVLLLEN
Sbjct: 61 LASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGEEVEKLAAALPEGGVLLLEN 120
Query: 121 VRFYKEEEKNDPEFAKKLAAVADLYVNDAFGTAHRAHASTEGVTKFLKPAVAGFLMQKEL 180
VRFYKEEEKNDPEFAKKLAAVADLYVNDAFGTAHRAHASTEGVTKFLKPAVAGFLMQKEL
Sbjct: 121 VRFYKEEEKNDPEFAKKLAAVADLYVNDAFGTAHRAHASTEGVTKFLKPAVAGFLMQKEL 180
Query: 181 DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDVLILGGGMIFTFYKAQGYAVGK 240
DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDVLILGGGMIFTFYKAQGYAVGK
Sbjct: 181 DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDVLILGGGMIFTFYKAQGYAVGK 240
Query: 241 SLVEEDKLELATSLIEKAKAKGVSLLLPTXXXXXXXXXXXXESKTVAASAIPDGWMGLDV 300
SLVEEDKLELATSLIEKAKAKGVSLLLPT ESKTVAASAIPDGWMGLDV
Sbjct: 241 SLVEEDKLELATSLIEKAKAKGVSLLLPTDVVVADKFAADAESKTVAASAIPDGWMGLDV 300
Query: 301 GPDAIKTSSEALDTCNTIIWNGPMGVFEFEKFAAGTDXXXXXXXXXXXXXXXXXXXXXXX 360
GPDAIKTSSEALDTCNTIIWNGPMGVFEFEKFAAGTD
Sbjct: 301 GPDAIKTSSEALDTCNTIIWNGPMGVFEFEKFAAGTDAIAKKLADLTTTKGATTIIGGGD 360
Query: 361 SVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALDEA 402
SVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALDEA
Sbjct: 361 SVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALDEA 402
>Os06g0668200 Similar to Phosphoglycerate kinase, cytosolic (EC 2.7.2.3)
Length = 401
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/402 (83%), Positives = 358/402 (89%), Gaps = 1/402 (0%)
Query: 1 MATKRSVGTLGEADLRGKKVFVRADLNVPLDDAQKITDDTRIRASVPTVKFLLEKGAKVI 60
MA+KRSVGTL E+DL+GKKVF+RADLNVPLDD+QKITDDTRIRASVPT+KFL+ KGAKVI
Sbjct: 1 MASKRSVGTLTESDLKGKKVFLRADLNVPLDDSQKITDDTRIRASVPTIKFLMGKGAKVI 60
Query: 61 LASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGEEVEKLAAALPEGGVLLLEN 120
LASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGEEV+KLAA LP+GGVLLLEN
Sbjct: 61 LASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGEEVQKLAATLPDGGVLLLEN 120
Query: 121 VRFYKEEEKNDPEFAKKLAAVADLYVNDAFGTAHRAHASTEGVTKFLKPAVAGFLMQKEL 180
VRFYKEEEKNDPEFA KLA+VADLYVNDAFGTAHRAHASTEGVTK+L+P+VAGFLMQKEL
Sbjct: 121 VRFYKEEEKNDPEFANKLASVADLYVNDAFGTAHRAHASTEGVTKYLRPSVAGFLMQKEL 180
Query: 181 DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDVLILGGGMIFTFYKAQGYAVGK 240
DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVD+LILGGGMI+TFYKAQGYAVGK
Sbjct: 181 DYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDILILGGGMIYTFYKAQGYAVGK 240
Query: 241 SLVEEDKLELATSLIEKAKAKGVSLLLPTXXXXXXXXXXXXESKTVAASAIPDGWMGLDV 300
SLVEEDKLELATSLIEKAK+KGVSLLLPT ESKTV ASAIPDGWMGLD+
Sbjct: 241 SLVEEDKLELATSLIEKAKSKGVSLLLPTDIVVADKFAADAESKTVPASAIPDGWMGLDI 300
Query: 301 GPDAIKTSSEALDTCNTIIWNGPMGVFEFEKFAAGTDXXXXXXXXXXXXXXXXXXXXXXX 360
GPD+IKT SE LDT T+IWNGPMGVFEFEKFAAGTD
Sbjct: 301 GPDSIKTFSETLDTTKTVIWNGPMGVFEFEKFAAGTD-AIAKKLADITAKGVTTIIGGGD 359
Query: 361 SVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALDEA 402
SVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLAL++A
Sbjct: 360 SVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALNDA 401
>AK100371
Length = 365
Score = 631 bits (1628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/361 (90%), Positives = 326/361 (90%)
Query: 42 IRASVPTVKFLLEKGAKVILASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGE 101
IRASVPTVKFLLEKGAKVILASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGE
Sbjct: 5 IRASVPTVKFLLEKGAKVILASHLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGE 64
Query: 102 EVEKLAAALPEGGVLLLENVRFYKEEEKNDPEFAKKLAAVADLYVNDAFGTAHRAHASTE 161
EVEKLAAALPEGGVLLLENVRFYKEEEKNDPEFAKKLAAVADLYVNDAFGTAHRAHASTE
Sbjct: 65 EVEKLAAALPEGGVLLLENVRFYKEEEKNDPEFAKKLAAVADLYVNDAFGTAHRAHASTE 124
Query: 162 GVTKFLKPAVAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDVLI 221
GVTKFLKPAVAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDVLI
Sbjct: 125 GVTKFLKPAVAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDVLI 184
Query: 222 LGGGMIFTFYKAQGYAVGKSLVEEDKLELATSLIEKAKAKGVSLLLPTXXXXXXXXXXXX 281
LGGGMIFTFYKAQGYAVGKSLVEEDKLELATSLIEKAKAKGVSLLLPT
Sbjct: 185 LGGGMIFTFYKAQGYAVGKSLVEEDKLELATSLIEKAKAKGVSLLLPTDVVVADKFAADA 244
Query: 282 ESKTVAASAIPDGWMGLDVGPDAIKTSSEALDTCNTIIWNGPMGVFEFEKFAAGTDXXXX 341
ESKTVAASAIPDGWMGLDVGPDAIKTSSEALDTCNTIIWNGPMGVFEFEKFAAGTD
Sbjct: 245 ESKTVAASAIPDGWMGLDVGPDAIKTSSEALDTCNTIIWNGPMGVFEFEKFAAGTDAIAK 304
Query: 342 XXXXXXXXXXXXXXXXXXXSVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALDE 401
SVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALDE
Sbjct: 305 KLADLTTTKGATTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALDE 364
Query: 402 A 402
A
Sbjct: 365 A 365
>Os01g0800266 Phosphoglycerate kinase family protein
Length = 385
Score = 348 bits (892), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 179/266 (67%), Positives = 204/266 (76%), Gaps = 33/266 (12%)
Query: 4 KRSVGTLGEADLRGKKVFVRADLNVPLDDAQKITDDTRIRASVPTVKFLLEKGAKVILAS 63
K+SVG L ADL GK+V +RADLNVPLD +Q ITDDTR+ A++PT+K L+ GAKVIL S
Sbjct: 74 KKSVGDLAAADLEGKRVLLRADLNVPLDASQNITDDTRVIAAIPTIKHLIGNGAKVILCS 133
Query: 64 HLGRPKGVTPKYSLKPLVPRLSELLGVDVVMANDCIGEEVEKLAAALPEGGVLLLENVRF 123
HLGRPKG+TPK+SL PLVPRLSELLG+ V A+D IG EVEK + LP G VLLLENVRF
Sbjct: 134 HLGRPKGITPKFSLAPLVPRLSELLGIQVQKADDVIGPEVEKSVSVLPNGSVLLLENVRF 193
Query: 124 YKEEEKNDPEFAKKLAAVADLYVNDAFGTAHRAHASTEGVTKFLKPAVAGFLMQKELDYL 183
YKEEEKNDPEFAKKLA++ADLY ELDYL
Sbjct: 194 YKEEEKNDPEFAKKLASLADLY---------------------------------ELDYL 220
Query: 184 VGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDVLILGGGMIFTFYKAQGYAVGKSLV 243
VGAV+NPK+PFAAIVGGSKVS+KIGVIESLL K D+L+LGGGMIFTFYKAQG+ VG SLV
Sbjct: 221 VGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGGGMIFTFYKAQGFPVGASLV 280
Query: 244 EEDKLELATSLIEKAKAKGVSLLLPT 269
E+DKLELATSL+ KAK KGVSL+LPT
Sbjct: 281 EDDKLELATSLLAKAKEKGVSLMLPT 306
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/42 (85%), Positives = 39/42 (92%)
Query: 361 SVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALDEA 402
SVAAVEK G+A+ MSHISTGGGASLELLEGK LPGV+ALDEA
Sbjct: 344 SVAAVEKVGVANVMSHISTGGGASLELLEGKELPGVVALDEA 385
>Os05g0496200 Similar to 3-phosphoglycerate kinase (Fragment)
Length = 181
Score = 209 bits (532), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 111/177 (62%), Positives = 125/177 (70%), Gaps = 1/177 (0%)
Query: 226 MIFTFYKAQGYAVGKSLVEEDKLELATSLIEKAKAKGVSLLLPTXXXXXXXXXXXXESKT 285
MIFTFYKAQG +VG SLVEEDKLELATSL+ KAK KGVSLLLP+ S+
Sbjct: 1 MIFTFYKAQGLSVGSSLVEEDKLELATSLLAKAKEKGVSLLLPSDVIIADKFAPDANSQV 60
Query: 286 VAASAIPDGWMGLDVGPDAIKTSSEALDTCNTIIWNGPMGVFEFEKFAAGTDXXXXXXXX 345
V ASAIPDGWMGLD+GPD++ + S L+T T+IWNGPMGVFEF+KFA GT+
Sbjct: 61 VPASAIPDGWMGLDIGPDSVASFSSTLETTQTVIWNGPMGVFEFDKFAVGTE-AIAKKLA 119
Query: 346 XXXXXXXXXXXXXXXSVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVLALDEA 402
SVAAVEK G+AD MSHISTGGGASLELLEGK LPGV+ALDEA
Sbjct: 120 DLSGKGVTTIIGGGDSVAAVEKVGVADVMSHISTGGGASLELLEGKELPGVIALDEA 176
>AK110279
Length = 844
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 106/427 (24%), Positives = 184/427 (43%), Gaps = 51/427 (11%)
Query: 15 LRGKKVFVRADLNVPLDDAQKITDDTRIRASVPTVKFLLEKGAKVILASHLGRPKGVT-- 72
+ ++ F+R D ++ + + T+ +L+ G K I+ G K
Sbjct: 18 VNNRRFFIRTDFERMIEHGTQQPPHVLLT----TILRVLQGGGKAIIGCSFGVNKNAVDM 73
Query: 73 --------------PKY-SLKPLVPRLSELL--GVDVVMANDCIG--EEVEKLAAALPEG 113
P++ S +PL L ++L V A DC+ ++V+KL G
Sbjct: 74 KLTPTQRQQALRAFPRHLSTEPLAQLLRKILPETCTVDFAPDCLAAMDQVKKLQ----RG 129
Query: 114 GVLLLENVRFYKEEEKNDPEFAKKLAAV----ADLYVNDAFGTAHRAHASTEGVTKFLKP 169
VL+LEN+RFYK E E ++AAV D++VND F T H A+T + K L+
Sbjct: 130 CVLVLENLRFYKAELSERAEERAEMAAVLERYTDVFVNDVFATLHLRAAATVELPKLLRH 189
Query: 170 AVAGFLMQKELDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDVLILGGGMIFT 229
V G LM +E+ Y + NP++P ++G + K+ ++E+L+ KVD + + +
Sbjct: 190 GVCGSLMAQEVTYFSQVLTNPQRPLTLVIGSVHIEEKMRLLEALIRKVDKVPISCAVAIP 249
Query: 230 FYKAQGYAVGK----------SLVEED----KLELATSLIEKAKAKGVSLLLPTXXXXXX 275
F + +G +VGK ++ ED + A ++ A+ V ++LP
Sbjct: 250 FLQVKGISVGKLSPNICDTAGHIIWEDPSTSPQDFARKIMRLAERYNVKIVLPEDFVCNR 309
Query: 276 XXXXXXESKTVAASAIPDGWMGLDVGPDAIKTSSEALDTCNTIIWNGPMGVFEFEKFAAG 335
+ +P +D+GP I+ + + +T+ W G MG + + G
Sbjct: 310 TIEPTRFPTVTPTNRVPADLYIVDIGPKTIQRFTAEISDSHTVFWTGRMGCADKADYTNG 369
Query: 336 TDXXXXXXXXXXXXXXXXXXXXXXXSVAAVEKAGLADKMSHISTGGGASLELLEGKTLPG 395
T +V AV AG+ D ++H++TG + L +LEG L
Sbjct: 370 T----TAIAIAVGHSNCVTVVGGKNTVQAVRTAGVEDSINHMTTGPNSMLRVLEGTPLAA 425
Query: 396 VLALDEA 402
+ AL +A
Sbjct: 426 LNALSDA 432
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.134 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,878,773
Number of extensions: 448770
Number of successful extensions: 747
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 740
Number of HSP's successfully gapped: 8
Length of query: 402
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 299
Effective length of database: 11,657,759
Effective search space: 3485669941
Effective search space used: 3485669941
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)