BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0661700 Os06g0661700|AK066945
         (705 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0661700  RabGAP/TBC domain containing protein               1348   0.0  
Os08g0518100  RabGAP/TBC domain containing protein                430   e-120
Os11g0479300  RabGAP/TBC domain containing protein                 69   9e-12

>Os06g0661700 RabGAP/TBC domain containing protein
          Length = 705

 Score = 1348 bits (3488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/705 (93%), Positives = 659/705 (93%)

Query: 1   MPECPARERFSALRGARWRADLGVLPDCASVSTEEFXXXXXXXXXXXXXXXXXXXIDPHL 60
           MPECPARERFSALRGARWRADLGVLPDCASVSTEEF                   IDPHL
Sbjct: 1   MPECPARERFSALRGARWRADLGVLPDCASVSTEEFRRAAADSRRRYANLRRRLLIDPHL 60

Query: 61  SKDEENAPDLAVENPLSQNPESTWGQYFRNAELEKMLNQDLSRLYPELGNFFQTTICQSM 120
           SKDEENAPDLAVENPLSQNPESTWGQYFRNAELEKMLNQDLSRLYPELGNFFQTTICQSM
Sbjct: 61  SKDEENAPDLAVENPLSQNPESTWGQYFRNAELEKMLNQDLSRLYPELGNFFQTTICQSM 120

Query: 121 LGRILLVWSLRYPELGYKQGMHELLAPLLYVLHADVHYFKQVRELHDELFSDDFDGQTFP 180
           LGRILLVWSLRYPELGYKQGMHELLAPLLYVLHADVHYFKQVRELHDELFSDDFDGQTFP
Sbjct: 121 LGRILLVWSLRYPELGYKQGMHELLAPLLYVLHADVHYFKQVRELHDELFSDDFDGQTFP 180

Query: 181 DRIKLNRSDRTNTIEGSAAKIXXXXXXXXXXXXXXXINDAYGAEGELGIILSEKFMEHDA 240
           DRIKLNRSDRTNTIEGSAAKI               INDAYGAEGELGIILSEKFMEHDA
Sbjct: 181 DRIKLNRSDRTNTIEGSAAKIRSLDDLDSDTRDLFLINDAYGAEGELGIILSEKFMEHDA 240

Query: 241 YCMFESLMHGSMNGAQGVVAITDFYSLSPAPESSTGLTPVREASSAIYHLLASVDSPLHS 300
           YCMFESLMHGSMNGAQGVVAITDFYSLSPAPESSTGLTPVREASSAIYHLLASVDSPLHS
Sbjct: 241 YCMFESLMHGSMNGAQGVVAITDFYSLSPAPESSTGLTPVREASSAIYHLLASVDSPLHS 300

Query: 301 HLMELGVEPQYFALRWLRVLFGREFSLDNLLFIWDEIFSSPNHSYCADIKNQSDYQFKIL 360
           HLMELGVEPQYFALRWLRVLFGREFSLDNLLFIWDEIFSSPNHSYCADIKNQSDYQFKIL
Sbjct: 301 HLMELGVEPQYFALRWLRVLFGREFSLDNLLFIWDEIFSSPNHSYCADIKNQSDYQFKIL 360

Query: 361 CSHRGALILSMAVSMMLHLRSSLLGSEHATSCLVRLLNFPGDTDLKSLIDKAKLLQPFAL 420
           CSHRGALILSMAVSMMLHLRSSLLGSEHATSCLVRLLNFPGDTDLKSLIDKAKLLQPFAL
Sbjct: 361 CSHRGALILSMAVSMMLHLRSSLLGSEHATSCLVRLLNFPGDTDLKSLIDKAKLLQPFAL 420

Query: 421 EANLPSSPLRGKSPLNPPNYWEETWKILQMSEEKRSGGSINRMKVRGLFRRSSPNTESNV 480
           EANLPSSPLRGKSPLNPPNYWEETWKILQMSEEKRSGGSINRMKVRGLFRRSSPNTESNV
Sbjct: 421 EANLPSSPLRGKSPLNPPNYWEETWKILQMSEEKRSGGSINRMKVRGLFRRSSPNTESNV 480

Query: 481 SRTKDANFEDSNSTSENMITTSNNVLEAGQPEVHRSSSVDVRDALGVACGNLSRDSSTSL 540
           SRTKDANFEDSNSTSENMITTSNNVLEAGQPEVHRSSSVDVRDALGVACGNLSRDSSTSL
Sbjct: 481 SRTKDANFEDSNSTSENMITTSNNVLEAGQPEVHRSSSVDVRDALGVACGNLSRDSSTSL 540

Query: 541 SCGTEYDHETHHADEPCASHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQN 600
           SCGTEYDHETHHADEPCASHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQN
Sbjct: 541 SCGTEYDHETHHADEPCASHDDKVVSEPDPLPVHNDKIDEVTIAAIQTCALVDYQQSQQN 600

Query: 601 KPCSVNGKSEVKYQQNFAVHEVGRKETFELGSSSDVADKELLGTLRLLGESMVENIEVID 660
           KPCSVNGKSEVKYQQNFAVHEVGRKETFELGSSSDVADKELLGTLRLLGESMVENIEVID
Sbjct: 601 KPCSVNGKSEVKYQQNFAVHEVGRKETFELGSSSDVADKELLGTLRLLGESMVENIEVID 660

Query: 661 LLFQPNLHSTSLDKSEEIVLGSIEQXXXXXXXXXXXXISELLRRI 705
           LLFQPNLHSTSLDKSEEIVLGSIEQ            ISELLRRI
Sbjct: 661 LLFQPNLHSTSLDKSEEIVLGSIEQAKAKAALEGLKKISELLRRI 705



>Os08g0518100 RabGAP/TBC domain containing protein
          Length = 834

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/474 (48%), Positives = 302/474 (63%), Gaps = 43/474 (9%)

Query: 7   RERFSALRGARWRADLGVLPDCASVSTEEFXXXXXXXXXXXXXXXXXXXIDPHLSKDEEN 66
           R RFS LRG RWR DLG+LP     S +E                    +DPH+ K+E  
Sbjct: 8   RRRFSNLRGVRWRVDLGILPASPGASVDEHRRAAADSRRRYVSLRRRLLVDPHVPKEEGR 67

Query: 67  APDLAVENPLSQNPESTWGQYFRNAELEKMLNQDLSRLYPELGNFFQTTICQSMLGRILL 126
           + +L V+NPLSQNP+S+WG++FR AELEK ++QDLSRLYPE G++FQT  CQ+ML RILL
Sbjct: 68  SSNLIVDNPLSQNPDSSWGRFFRGAELEKTVDQDLSRLYPEDGSYFQTPTCQAMLRRILL 127

Query: 127 VWSLRYPELGYKQGMHELLAPLLYVLHADVHYFKQVRELHDELFSDDFDGQTFPDRIKLN 186
           +W L++PE GY+QGMHELLAPL+YVL  D+    QVR+LH++ F+DDFDG  FPD   + 
Sbjct: 128 MWCLQHPEHGYRQGMHELLAPLVYVLQVDIDKLSQVRKLHEDCFNDDFDGVPFPDTDMVF 187

Query: 187 R------------SDRTNTIEGSAAKIXXXXXXXXXXXXXXXINDAYGAEGELGIILSEK 234
                        +D  N  E S +K                ++DAYGAEGELGI+LSE+
Sbjct: 188 SYKPRKDPKWSFGADNQNDSERS-SKSNTLDELDPDTKEIILLSDAYGAEGELGIVLSER 246

Query: 235 FMEHDAYCMFESLMHGSMNGAQGVVAITDFYSLSPAPESSTGLTPVREASSAIYHLLASV 294
           FMEHDAY MF+ L    M+G  GVV + +F+S S +  SS+ L PV EASSA++HLL+ V
Sbjct: 247 FMEHDAYSMFDGL----MDGGSGVVRMAEFFSPS-SVGSSSNLPPVIEASSALFHLLSIV 301

Query: 295 DSPLHSHLMELGVEPQYFALRWLRVLFGREFSLDNLLFIWDEIFSSPNHSYCADIKNQSD 354
           +  LH+H +EL VEPQ+FALRWLRVLFGREF L++LL +WD++F+  N+     + +  +
Sbjct: 302 EPTLHNHFIELKVEPQWFALRWLRVLFGREFCLNDLLVVWDKVFACSNNML---LSSDEE 358

Query: 355 YQFKILCSHRGALILSMAVSMMLHLRSSLLGSEHATSCLVRLLNFPGDTDLKSLIDKAKL 414
           Y F+ILCS RGA I +MAVSM+LH+RSSLL +E    CL RLLNFP + D++ LI+KA  
Sbjct: 359 YNFRILCSDRGAFIAAMAVSMLLHIRSSLLATELDVFCLQRLLNFPTNIDVQKLIEKANS 418

Query: 415 LQPFALEANLPSSPLRGK--------------------SPLNP--PNYWEETWK 446
           LQ  A++AN  SS    K                    +PL+P   +YWEE W+
Sbjct: 419 LQSIAIDANTSSSSFLLKRDSYEFDRVHSNLSSSTPPRTPLHPVSESYWEEKWR 472



>Os11g0479300 RabGAP/TBC domain containing protein
          Length = 338

 Score = 69.3 bits (168), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 1/83 (1%)

Query: 73  ENPLSQNPESTWGQYFRNAELEKMLNQDLSRLYPELGNFFQTTICQSMLGRILLVWSLRY 132
           E+PLS    S W QYF+ +E+ + +++D+ R +PE+  FF     Q  L R+L+++S   
Sbjct: 98  EHPLSFGKSSLWNQYFQESEILEQIDRDVKRTHPEMP-FFSAKANQESLRRVLIIFSKLN 156

Query: 133 PELGYKQGMHELLAPLLYVLHAD 155
           P + Y QGM+E+LAPL YV   D
Sbjct: 157 PTIRYVQGMNEVLAPLFYVFKND 179



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,540,306
Number of extensions: 912310
Number of successful extensions: 2244
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 2241
Number of HSP's successfully gapped: 3
Length of query: 705
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 597
Effective length of database: 11,396,689
Effective search space: 6803823333
Effective search space used: 6803823333
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)