FiT-DB / Search/ Help/ Sample detail

Os08g0518100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RabGAP/TBC domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.013) R2 : 0.743
β1 : 0.718 (0.0475) R2dD : 0.134 R2D : 0.0702
β2 : 0.998 (0.0325) R2dC : 0.531 R2C : 0.527
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.358 (0.0277) R2dN8 : 0.126 R2N8 : 0.0658
σ : 0.244
deviance : 27.17
__
_____
C
peak time of C : 3.37
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.39 0.222 13.9 0.729 0.752 0.537 -0.135 -0.066 0.397 5.65 17.13 34 -- --
22.4 0.22 13.9 0.725 0.749 0.539 -0.148 -- 0.399 5.76 13.69 36 -- --
22.44 0.221 13.9 0.729 0.751 0.538 -- -0.0718 0.398 5.66 17.14 33 -- --
22.45 0.221 13.9 0.723 0.749 0.541 -- -- 0.4 5.78 13.84 36 -- --
27.31 0.243 13.9 0.782 -- 0.962 -- -0.166 0.405 -- 2.546 470 -- --
27.12 0.244 13.9 0.716 0.998 -- -0.123 -- 0.357 3.37 -- -- -- --
27.17 0.244 13.9 0.718 0.998 -- -- -- 0.358 3.37 -- -- -- --
27.38 0.244 13.9 0.775 -- 0.964 -- -- 0.403 -- 2.521 472 -- --
35.75 0.278 13.9 -- 0.76 0.548 -- -- 0.322 5.88 10 44 -- --
83.19 0.426 13.9 0.76 -- -- -- -- 0.384 -- -- -- -- --
40.75 0.299 13.9 -- 1.01 -- -- -- 0.278 3.37 -- -- -- --
42.19 0.303 13.9 -- -- 0.966 -- -- 0.332 -- 8.49 440 -- --
98.43 0.463 13.9 -- -- -- -- -- 0.3 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 20.25 temperature 10.0 270 > th dose dependent rect. 5 10
2 20.38 temperature 30.0 270 < th dose independent rect. 24 11
6 20.75 temperature 20.0 10 > th dose dependent rect. 6 10
8 20.77 temperature 15.0 10 > th dose dependent rect. 6 12
32 21.23 radiation 40.0 270 < th dose independent rect. 9 10
39 21.32 radiation 40.0 270 < th dose independent rect. 24 19
40 21.36 radiation 40.0 270 < th dose independent rect. 24 21
45 21.44 temperature 25.0 10 > th dose dependent rect. 21 19
46 21.44 radiation 40.0 270 < th dose dependent rect. 24 19
47 21.46 atmosphere 1000.0 90 > th dose independent rect. 3 18
48 21.46 atmosphere 1000.0 270 > th dose independent rect. 24 20
52 21.51 atmosphere 995.0 270 > th dose independent rect. 15 14
53 21.52 temperature 25.0 10 > th dose dependent rect. 1 15
55 21.54 radiation 40.0 90 < th dose dependent rect. 3 18
57 21.56 temperature 25.0 10 > th dose dependent rect. 3 13
65 21.61 atmosphere 1000.0 10 > th dose independent rect. 3 19
72 21.64 radiation 1.0 90 < th dose independent rect. 3 16
78 21.66 radiation 10.0 90 < th dose dependent rect. 3 18
82 21.68 radiation 1.0 90 < th dose independent rect. 3 18
89 21.71 atmosphere 995.0 90 > th dose dependent rect. 2 19
109 21.79 radiation 1.0 90 < th dose dependent sin 1 NA
114 21.82 radiation 1.0 90 < th dose independent sin 1 NA
123 21.83 radiation 1.0 90 < th dose dependent rect. 3 16
144 21.88 precipitation 0.1 270 < th dose independent rect. 11 13
147 21.88 radiation 40.0 90 < th dose dependent rect. 10 11
148 21.88 precipitation 0.1 270 < th dose dependent rect. 11 13
172 21.92 radiation 20.0 30 < th dose dependent rect. 10 20
173 21.93 wind 9.0 270 < th dose independent rect. 11 13
202 21.97 atmosphere 995.0 10 > th dose dependent rect. 3 18
204 21.97 radiation 30.0 30 < th dose dependent rect. 24 23
221 22.01 radiation 20.0 30 < th dose dependent rect. 7 23
222 22.02 atmosphere 1000.0 10 > th dose independent rect. 24 23
226 22.03 radiation 40.0 270 < th dose independent rect. 24 11
256 22.10 atmosphere 995.0 270 > th dose dependent rect. 15 4
262 22.11 radiation 1.0 90 > th dose independent sin 1 NA
264 22.11 radiation 30.0 270 < th dose independent rect. 15 14
276 22.12 atmosphere 995.0 270 > th dose dependent rect. 24 19
280 22.13 radiation 1.0 90 > th dose independent rect. 5 12
287 22.13 radiation 40.0 90 < th dose independent rect. 3 18
301 22.15 temperature 10.0 270 > th dose independent rect. 24 11
303 22.15 atmosphere 995.0 270 > th dose independent rect. 24 11
304 22.15 atmosphere 1015.0 270 < th dose independent rect. 24 11
305 22.15 temperature 10.0 270 > th dose independent rect. 11 13
317 22.16 humidity 50.0 270 > th dose dependent rect. 24 11
331 22.18 radiation 40.0 270 < th dose dependent rect. 24 12
343 22.21 wind 9.0 270 < th dose independent rect. 24 11
356 22.23 wind 9.0 270 < th dose independent rect. 5 10
357 22.23 precipitation 0.1 270 < th dose independent rect. 5 10
358 22.23 temperature 30.0 90 < th dose independent rect. 2 19
361 22.23 precipitation 0.1 270 < th dose dependent rect. 5 10
372 22.24 radiation 20.0 30 < th dose dependent rect. 10 22
387 22.27 humidity 70.0 10 > th dose dependent rect. 3 18
399 22.29 temperature 30.0 270 < th dose independent rect. 24 19
402 22.29 radiation 40.0 10 < th dose dependent rect. 10 12
410 22.30 atmosphere 1000.0 10 > th dose independent rect. 16 14
447 22.34 wind 1.0 270 > th dose independent rect. 15 13
455 22.35 humidity 50.0 270 > th dose independent rect. 24 11
470 22.36 temperature 10.0 270 > th dose independent rect. 5 10
471 22.36 atmosphere 1015.0 270 < th dose independent rect. 5 10
472 22.36 temperature 10.0 270 > th dose independent rect. 15 14
481 22.36 humidity 60.0 270 > th dose dependent rect. 24 19
528 22.41 precipitation 0.1 270 < th dose independent rect. 24 11
531 22.41 precipitation 0.1 270 < th dose dependent rect. 24 11
537 22.42 temperature 15.0 10 > th dose dependent rect. 18 12
601 22.46 radiation 20.0 30 < th dose dependent rect. 16 22
630 22.48 radiation 20.0 30 < th dose dependent no NA NA
632 22.48 temperature 30.0 90 < th dose dependent rect. 3 16
637 22.48 radiation 20.0 30 < th dose dependent rect. 13 23
674 22.53 temperature 30.0 90 < th dose dependent rect. 3 18
689 22.55 temperature 25.0 90 < th dose independent rect. 3 12
701 22.56 atmosphere 1015.0 270 < th dose independent rect. 15 14
710 22.57 wind 9.0 270 < th dose independent rect. 15 14
730 22.59 temperature 25.0 90 < th dose independent rect. 3 16
763 22.61 temperature 25.0 10 > th dose dependent sin 2 NA
770 22.62 atmosphere 1000.0 270 > th dose independent rect. 15 4
781 22.62 atmosphere 995.0 30 > th dose dependent rect. 24 23
788 22.63 temperature 25.0 270 > th dose dependent sin 6 NA
789 22.63 wind 9.0 270 < th dose dependent rect. 21 3
823 22.65 atmosphere 1000.0 720 > th dose independent rect. 17 2
824 22.65 temperature 25.0 90 < th dose independent rect. 3 14
848 22.66 humidity 70.0 270 > th dose independent rect. 24 19
875 22.68 precipitation 0.1 720 < th dose independent rect. 21 10
881 22.68 temperature 30.0 90 < th dose dependent rect. 21 6
883 22.68 precipitation 0.1 720 < th dose dependent rect. 21 10
898 22.69 wind 5.0 90 < th dose independent rect. 21 6
915 22.70 humidity 70.0 270 > th dose independent rect. 24 12
932 22.71 temperature 25.0 90 > th dose independent rect. 5 11
954 22.72 atmosphere 1015.0 720 < th dose independent rect. 7 14
955 22.72 wind 9.0 90 < th dose dependent rect. 21 6
1000 22.75 temperature 10.0 720 > th dose dependent rect. 5 2