BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0518100 Os08g0518100|AK066731
         (834 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0518100  RabGAP/TBC domain containing protein               1586   0.0  
Os06g0661700  RabGAP/TBC domain containing protein                452   e-127

>Os08g0518100 RabGAP/TBC domain containing protein
          Length = 834

 Score = 1586 bits (4106), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 784/834 (94%), Positives = 784/834 (94%)

Query: 1   MAEEGEERRRFSNLRGVRWRVDLGILPASPGASVDEHRRAAADXXXXXXXXXXXXXXDPH 60
           MAEEGEERRRFSNLRGVRWRVDLGILPASPGASVDEHRRAAAD              DPH
Sbjct: 1   MAEEGEERRRFSNLRGVRWRVDLGILPASPGASVDEHRRAAADSRRRYVSLRRRLLVDPH 60

Query: 61  VPKEEGRSSNLIVDNPLSQNPDSSWGRFFRGAELEKTVDQDLSRLYPEDGSYFQTPTCQA 120
           VPKEEGRSSNLIVDNPLSQNPDSSWGRFFRGAELEKTVDQDLSRLYPEDGSYFQTPTCQA
Sbjct: 61  VPKEEGRSSNLIVDNPLSQNPDSSWGRFFRGAELEKTVDQDLSRLYPEDGSYFQTPTCQA 120

Query: 121 MLRRILLMWCLQHPEHGYRQGMHELLAPLVYVLQVDIDKLSQVRKLHEDCFNDDFDGVPF 180
           MLRRILLMWCLQHPEHGYRQGMHELLAPLVYVLQVDIDKLSQVRKLHEDCFNDDFDGVPF
Sbjct: 121 MLRRILLMWCLQHPEHGYRQGMHELLAPLVYVLQVDIDKLSQVRKLHEDCFNDDFDGVPF 180

Query: 181 PDTDMVFSYKPRKDPKWSFGADNQNDSERSSKSNTLDELDPDTKEIILLSDAYGAEGELG 240
           PDTDMVFSYKPRKDPKWSFGADNQNDSERSSKSNTLDELDPDTKEIILLSDAYGAEGELG
Sbjct: 181 PDTDMVFSYKPRKDPKWSFGADNQNDSERSSKSNTLDELDPDTKEIILLSDAYGAEGELG 240

Query: 241 IVLSERFMEHDAYSMFDGLMDGGSGVVRMAEFFXXXXXXXXXNLPPVIEASSALFHLLSI 300
           IVLSERFMEHDAYSMFDGLMDGGSGVVRMAEFF         NLPPVIEASSALFHLLSI
Sbjct: 241 IVLSERFMEHDAYSMFDGLMDGGSGVVRMAEFFSPSSVGSSSNLPPVIEASSALFHLLSI 300

Query: 301 VEPTLHNHFIELKVEPQWFALRWLRVLFGREFCLNDLLVVWDKVFACSNNMLLSSDEEYN 360
           VEPTLHNHFIELKVEPQWFALRWLRVLFGREFCLNDLLVVWDKVFACSNNMLLSSDEEYN
Sbjct: 301 VEPTLHNHFIELKVEPQWFALRWLRVLFGREFCLNDLLVVWDKVFACSNNMLLSSDEEYN 360

Query: 361 FRILCSDRGAFIAAMAVSMLLHIRSSLLATELDVFCLQRLLNFPTNIDVQKLIEKANSLQ 420
           FRILCSDRGAFIAAMAVSMLLHIRSSLLATELDVFCLQRLLNFPTNIDVQKLIEKANSLQ
Sbjct: 361 FRILCSDRGAFIAAMAVSMLLHIRSSLLATELDVFCLQRLLNFPTNIDVQKLIEKANSLQ 420

Query: 421 SIAIDANTSSSSFLLKRDSYEFDRVHSNLSSSTPPRTPLHPVSESYWEEKWRNVHKDGTT 480
           SIAIDANTSSSSFLLKRDSYEFDRVHSNLSSSTPPRTPLHPVSESYWEEKWRNVHKDGTT
Sbjct: 421 SIAIDANTSSSSFLLKRDSYEFDRVHSNLSSSTPPRTPLHPVSESYWEEKWRNVHKDGTT 480

Query: 481 PKEVERGNXXXXXXXXXXXXXXXXXRTESDPSPVKVLSVSSNDTRNSVRRCLLNTLSDDL 540
           PKEVERGN                 RTESDPSPVKVLSVSSNDTRNSVRRCLLNTLSDDL
Sbjct: 481 PKEVERGNSFSKQLKKSLTQKLGLSRTESDPSPVKVLSVSSNDTRNSVRRCLLNTLSDDL 540

Query: 541 DCSNELAGKTQEDEFPIISVHREHPLSSAEPSKLKAAGENVTVSASCVAKLSPLKKSVVE 600
           DCSNELAGKTQEDEFPIISVHREHPLSSAEPSKLKAAGENVTVSASCVAKLSPLKKSVVE
Sbjct: 541 DCSNELAGKTQEDEFPIISVHREHPLSSAEPSKLKAAGENVTVSASCVAKLSPLKKSVVE 600

Query: 601 PANENATQGTKCVPEACSSGENSPVFYAARASAGNEPLNGQDTDXXXXXXXXXXFAGDHD 660
           PANENATQGTKCVPEACSSGENSPVFYAARASAGNEPLNGQDTD          FAGDHD
Sbjct: 601 PANENATQGTKCVPEACSSGENSPVFYAARASAGNEPLNGQDTDSESSSVTSNSFAGDHD 660

Query: 661 RDEILKDEPSSSNDDNKTIQDSEAASSDKSPDRNGTSERAVVSNERKPFISKFQWLLKLG 720
           RDEILKDEPSSSNDDNKTIQDSEAASSDKSPDRNGTSERAVVSNERKPFISKFQWLLKLG
Sbjct: 661 RDEILKDEPSSSNDDNKTIQDSEAASSDKSPDRNGTSERAVVSNERKPFISKFQWLLKLG 720

Query: 721 RPSVEGNMEKSSGETSADKQDGDTSCSPSDGNSNNSRGSVKLASGDKKVMGSLKNLGQNM 780
           RPSVEGNMEKSSGETSADKQDGDTSCSPSDGNSNNSRGSVKLASGDKKVMGSLKNLGQNM
Sbjct: 721 RPSVEGNMEKSSGETSADKQDGDTSCSPSDGNSNNSRGSVKLASGDKKVMGSLKNLGQNM 780

Query: 781 LENIQVIESAFQQDRGQPGPVENFSNNILGGKGQVTAMAALTELRKISNLLSEM 834
           LENIQVIESAFQQDRGQPGPVENFSNNILGGKGQVTAMAALTELRKISNLLSEM
Sbjct: 781 LENIQVIESAFQQDRGQPGPVENFSNNILGGKGQVTAMAALTELRKISNLLSEM 834



>Os06g0661700 RabGAP/TBC domain containing protein
          Length = 705

 Score =  452 bits (1163), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/474 (50%), Positives = 313/474 (66%), Gaps = 43/474 (9%)

Query: 8   RRRFSNLRGVRWRVDLGILPASPGASVDEHRRAAADXXXXXXXXXXXXXXDPHVPKEEGR 67
           R RFS LRG RWR DLG+LP     S +E RRAAAD              DPH+ K+E  
Sbjct: 7   RERFSALRGARWRADLGVLPDCASVSTEEFRRAAADSRRRYANLRRRLLIDPHLSKDEEN 66

Query: 68  SSNLIVDNPLSQNPDSSWGRFFRGAELEKTVDQDLSRLYPEDGSYFQTPTCQAMLRRILL 127
           + +L V+NPLSQNP+S+WG++FR AELEK ++QDLSRLYPE G++FQT  CQ+ML RILL
Sbjct: 67  APDLAVENPLSQNPESTWGQYFRNAELEKMLNQDLSRLYPELGNFFQTTICQSMLGRILL 126

Query: 128 MWCLQHPEHGYRQGMHELLAPLVYVLQVDIDKLSQVRKLHEDCFNDDFDGVPFPDTDMVF 187
           +W L++PE GY+QGMHELLAPL+YVL  D+    QVR+LH++ F+DDFDG  FPD   + 
Sbjct: 127 VWSLRYPELGYKQGMHELLAPLLYVLHADVHYFKQVRELHDELFSDDFDGQTFPDRIKLN 186

Query: 188 SYKPRKDPKWSFGADNQNDSERS-SKSNTLDELDPDTKEIILLSDAYGAEGELGIVLSER 246
                        +D  N  E S +K  +LD+LD DT+++ L++DAYGAEGELGI+LSE+
Sbjct: 187 R------------SDRTNTIEGSAAKIRSLDDLDSDTRDLFLINDAYGAEGELGIILSEK 234

Query: 247 FMEHDAYSMFDGL----MDGGSGVVRMAEFFXXX-XXXXXXNLPPVIEASSALFHLLSIV 301
           FMEHDAY MF+ L    M+G  GVV + +F+           L PV EASSA++HLL+ V
Sbjct: 235 FMEHDAYCMFESLMHGSMNGAQGVVAITDFYSLSPAPESSTGLTPVREASSAIYHLLASV 294

Query: 302 EPTLHNHFIELKVEPQWFALRWLRVLFGREFCLNDLLVVWDKVFACSNNML---LSSDEE 358
           +  LH+H +EL VEPQ+FALRWLRVLFGREF L++LL +WD++F+  N+     + +  +
Sbjct: 295 DSPLHSHLMELGVEPQYFALRWLRVLFGREFSLDNLLFIWDEIFSSPNHSYCADIKNQSD 354

Query: 359 YNFRILCSDRGAFIAAMAVSMLLHIRSSLLATELDVFCLQRLLNFPTNIDVQKLIEKANS 418
           Y F+ILCS RGA I +MAVSM+LH+RSSLL +E    CL RLLNFP + D++ LI+KA  
Sbjct: 355 YQFKILCSHRGALILSMAVSMMLHLRSSLLGSEHATSCLVRLLNFPGDTDLKSLIDKAKL 414

Query: 419 LQSIAIDANTSSSSFLLKRDSYEFDRVHSNLSSSTPPRTPLHPVSESYWEEKWR 472
           LQ  A++AN  SS    K                    +PL+P   +YWEE W+
Sbjct: 415 LQPFALEANLPSSPLRGK--------------------SPLNP--PNYWEETWK 446



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,721,332
Number of extensions: 1211983
Number of successful extensions: 2632
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 2630
Number of HSP's successfully gapped: 2
Length of query: 834
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 725
Effective length of database: 11,344,475
Effective search space: 8224744375
Effective search space used: 8224744375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)