BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0518100 Os08g0518100|AK066731
(834 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G29950.1 | chr4:14657464-14660370 FORWARD LENGTH=829 533 e-151
AT5G57210.1 | chr5:23181088-23183705 REVERSE LENGTH=738 512 e-145
AT2G19240.1 | chr2:8349048-8352562 REVERSE LENGTH=841 72 2e-12
AT4G13730.1 | chr4:7970299-7974055 FORWARD LENGTH=450 58 2e-08
AT1G04830.2 | chr1:1358782-1361844 REVERSE LENGTH=460 50 4e-06
>AT4G29950.1 | chr4:14657464-14660370 FORWARD LENGTH=829
Length = 828
Score = 533 bits (1373), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/486 (55%), Positives = 341/486 (70%), Gaps = 22/486 (4%)
Query: 6 EERRRFSNLRGVRWRVDLGILPASPGASVDEHRRAAADXXXXXXXXXXXXXXDPHVPKEE 65
E RRF+NLRG+RWRV+LG+LP +S+D+ R+A A+ DPH+ K+
Sbjct: 12 ESDRRFANLRGLRWRVNLGVLPFQ-SSSIDDLRKATAESRRRYAALRRRLLIDPHLSKDV 70
Query: 66 GRSSNLIVDNPLSQNPDSSWGRFFRGAELEKTVDQDLSRLYPEDGSYFQTPTCQAMLRRI 125
S +L +DNPLSQNPDS+WGRFFR AELEKT+DQDLSRLYPE SYFQ P CQ MLRRI
Sbjct: 71 RNSPDLSIDNPLSQNPDSTWGRFFRNAELEKTLDQDLSRLYPEHWSYFQAPGCQGMLRRI 130
Query: 126 LLMWCLQHPEHGYRQGMHELLAPLVYVLQVDIDKLSQVRKLHEDCFNDDFDGVPFPDTDM 185
LL+WCL+HPE+GYRQGMHELLAPL+YVL VD+D+LS+VRK +ED F D FDG+ F + D+
Sbjct: 131 LLLWCLKHPEYGYRQGMHELLAPLLYVLHVDVDRLSEVRKSYEDHFIDRFDGLSFEERDI 190
Query: 186 VFSYKPRKDPKWSFGADNQND-----SERSSKSNTLDELDPDTKEIILLSDAYGAEGELG 240
++++ +K F D +D S K +LDELDP+ + I+ LSDAYGAEGELG
Sbjct: 191 TYNFEFKK-----FLEDFTDDEIGGIQGNSKKIKSLDELDPEIQSIVRLSDAYGAEGELG 245
Query: 241 IVLSERFMEHDAYSMFDGLMDGGSGVVRMAEFFXXX-XXXXXXNLPPVIEASSALFHLLS 299
IVLSE+FMEHDAY MFD LM+G G V MA FF LPPV+EAS+A +HLLS
Sbjct: 246 IVLSEKFMEHDAYCMFDALMNGVHGCVAMAGFFAYSPASGSHTGLPPVLEASTAFYHLLS 305
Query: 300 IVEPTLHNHFIELKVEPQWFALRWLRVLFGREFCLNDLLVVWDKVFACSNNMLLSSDEEY 359
V+ +LH+H +EL VEPQ+F LRWLRVLFGREF L DLL+VWD++F+ N +D
Sbjct: 306 FVDSSLHSHLVELGVEPQYFGLRWLRVLFGREFLLQDLLIVWDEIFSADNTTRTDADNNT 365
Query: 360 N--FRILCSDRGAFIAAMAVSMLLHIRSSLLATELDVFCLQRLLNFPTNIDVQKLIEKAN 417
N ++I S RGA I+ MAVSM+L +RSSLLATE CLQRLLNFP IDV+K+IEKA
Sbjct: 366 NQSYKIFDSPRGALISGMAVSMILCLRSSLLATENAASCLQRLLNFPEKIDVRKIIEKAK 425
Query: 418 SLQSIAIDANTSSSSFLLKRDSYEFD-------RVHSNLSSSTPPRTPLHPVSESYWEEK 470
SLQ++A+D + SS+ + D ++ R +S S ST P++PL +SYWE++
Sbjct: 426 SLQTLALDDDVRSSALSIN-DGFDQSISPAVPARTNSFPSGSTSPKSPLIITPQSYWEDQ 484
Query: 471 WRNVHK 476
WR +HK
Sbjct: 485 WRVLHK 490
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 86/150 (57%), Gaps = 8/150 (5%)
Query: 689 KSPDRNGTSERAV--VSNERKPFISKFQWLLKLGRPSVEGNMEKSSGETSADKQDGDTSC 746
+S D + ++++V + K KFQW K GR +V + +G S+ D C
Sbjct: 683 QSNDEDNAADKSVANIKERSKVLPGKFQWFWKFGR-NVTAEETRCNGVESSK---SDLVC 738
Query: 747 SPSDGNSNNSRGSVKLASGDKKVMGSLKNLGQNMLENIQVIESAFQQDRG--QPGPVENF 804
S + + S D+ VM +LKNLG +MLE+IQVIES FQQ+RG Q G +EN
Sbjct: 739 SSESHSLPQASSSGSKGDTDQNVMNTLKNLGNSMLEHIQVIESVFQQERGQVQAGLIENL 798
Query: 805 SNNILGGKGQVTAMAALTELRKISNLLSEM 834
S N L KGQVTAM AL ELRKISNLL EM
Sbjct: 799 SKNNLVEKGQVTAMTALKELRKISNLLLEM 828
>AT5G57210.1 | chr5:23181088-23183705 REVERSE LENGTH=738
Length = 737
Score = 512 bits (1318), Expect = e-145, Method: Compositional matrix adjust.
Identities = 275/546 (50%), Positives = 359/546 (65%), Gaps = 22/546 (4%)
Query: 10 RFSNLRGVRWRVDLGILPASPGASVDEHRRAAADXXXXXXXXXXXXXXDPHVPKEEGRSS 69
RF LRGVRWR++LGILP+SP +++DE RR AD DPH+PK+ S
Sbjct: 29 RFEKLRGVRWRINLGILPSSPSSTIDELRRVTADSRRRYAALRRRLLIDPHLPKKGTNSP 88
Query: 70 NLIVDNPLSQNPDSSWGRFFRGAELEKTVDQDLSRLYPEDGSYFQTPTCQAMLRRILLMW 129
+L +DNPLSQNPDS+WGRFFR AELEKT+DQDLSRLYPE GSYFQ+ CQ MLRRILL+W
Sbjct: 89 DLTIDNPLSQNPDSTWGRFFRNAELEKTLDQDLSRLYPEHGSYFQSSGCQGMLRRILLLW 148
Query: 130 CLQHPEHGYRQGMHELLAPLVYVLQVDIDKLSQVRKLHEDCFNDDFDGVPFPDTDM-VFS 188
CL+HPE GYRQGMHELLAPL+YVLQVD+ L++VR +ED F D FD + F + D +
Sbjct: 149 CLKHPEIGYRQGMHELLAPLLYVLQVDVQYLTEVRSNYEDQFVDLFDELAFQERDSGAYD 208
Query: 189 YKPRK----DPKWSFGADNQNDSERSSKSNTLDELDPDTKEIILLSDAYGAEGELGIVLS 244
+ +K + + S + K + DELD +T+ +LLSDAYG EGELGIVLS
Sbjct: 209 FDIKKVLDDSMEDEEEDGPPSGSTKKKKPKSFDELDTETQTAVLLSDAYGGEGELGIVLS 268
Query: 245 ERFMEHDAYSMFDGLMDGGS--GVVRMAEFFXXXX-XXXXXNLPPVIEASSALFHLLSIV 301
++FMEHDAY+MFD LM GGS G V +A FF LPPVIEAS AL+HLLS+V
Sbjct: 269 DKFMEHDAYTMFDALMYGGSSLGSVSVANFFIYSAPNDSITGLPPVIEASGALYHLLSLV 328
Query: 302 EPTLHNHFIELKVEPQWFALRWLRVLFGREFCLNDLLVVWDKVFACSNNML---LSSDEE 358
+ +LH+H +EL VEPQ+FALRWLRVLFGREF L++LL+VWD++F+ N+ + + +D
Sbjct: 329 DASLHSHLVELGVEPQYFALRWLRVLFGREFPLSNLLIVWDEIFSADNSEVERGVEADLG 388
Query: 359 YNFRILCSDRGAFIAAMAVSMLLHIRSSLLATELDVFCLQRLLNFPTNIDVQKLIEKANS 418
FRIL S RGA +A MAVSM+L++RSSLLATE L++LLNFP +ID+ K+IEKA +
Sbjct: 389 CEFRILSSPRGALVAGMAVSMILYLRSSLLATENATSSLKKLLNFPEDIDLSKVIEKAKT 448
Query: 419 LQSIAIDANTSSSSFLLKRDSYEFDRVHS-NLSSSTPPRTPLHPVSESYWEEKWR---NV 474
LQS+A++ N L+ + + R HS ++ S + +P+ ESYWEEKWR +
Sbjct: 449 LQSLALEINARRD--LIPKGPRKPMRGHSLSVDSISLGSSPVGIEPESYWEEKWRVLNSA 506
Query: 475 HKDGTTPKEVERGNXXXXXXXXXXXXXXXXXRTESDPSPVKVLSVSSNDTRNSVRRCLLN 534
++ K ++R RTESDPSP + + + +RR LL+
Sbjct: 507 EEEERRKKALQR--PKAGKKSWSERVKLRLSRTESDPSPAE---AKRSGNKPHIRRSLLD 561
Query: 535 TLSDDL 540
LS L
Sbjct: 562 DLSRQL 567
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 32/182 (17%)
Query: 658 DHDRDEILKDEPSSSNDDNKTIQDSEAASSD---KSPDRNGTSERAV-VSNERKPFISKF 713
D +R + D PS+ +DN + + D P+ ++ + + ERK KF
Sbjct: 583 DIERSSTVSDTPSAEYEDNSSDKGKSENHMDLPLSIPENEPEAKSGMNIFRERKILSGKF 642
Query: 714 QWLLKLGRPSVEGNMEKSSGETSADKQDGDTSCSPSDGNSNNSRGSVKLASGDKKVMGSL 773
Q L +LGR ++ D +DG T + G GD SL
Sbjct: 643 QRLWRLGRNLSGEETSETKEAKQVDSEDGKTDSDSTSG------------PGD-----SL 685
Query: 774 KNLGQNMLENIQVIESAFQQDRGQPGPVENFSNNILGGKGQVTAMAALTELRKISN-LLS 832
KN G++MLE+I+VIES + EN + N G++T AL ELR++ N LLS
Sbjct: 686 KNTGRSMLEHIKVIESVLELSSP-----ENMTEN-----GKLTVEEALRELRRLGNMLLS 735
Query: 833 EM 834
EM
Sbjct: 736 EM 737
>AT2G19240.1 | chr2:8349048-8352562 REVERSE LENGTH=841
Length = 840
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 80/150 (53%), Gaps = 11/150 (7%)
Query: 692 DRNGTSERAV-VSNERKPFISKFQWLLKLGRP--SVEGNMEKSSGETSADKQDGDTSCSP 748
D + +++++V ++ E K QW KL R S E + K+S T + D
Sbjct: 695 DEDVSTDKSVGITKEYKLLHGIVQWFRKLKRTLSSEETSHRKASDATKTN----DVKIKK 750
Query: 749 SDGNSNNSRGSVKLASGD--KKVMGSLKNLGQNMLENIQVIESAFQQDRGQ--PGPVENF 804
+ + L+SGD + + +LKNLGQ+ML++I+ IE FQQ+ G + N
Sbjct: 751 NQIGCYSESHPQALSSGDSSQNLRKTLKNLGQSMLKHIEAIELVFQQEPCLVPAGLIGNL 810
Query: 805 SNNILGGKGQVTAMAALTELRKISNLLSEM 834
+ L KGQVTA AL ELRK+SNLLSEM
Sbjct: 811 AKTNLIEKGQVTATTALKELRKLSNLLSEM 840
>AT4G13730.1 | chr4:7970299-7974055 FORWARD LENGTH=450
Length = 449
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 8/109 (7%)
Query: 58 DPHV--PKEEGRSSNLIVDNPLSQNPDSSWGRFFRGAELEKTVDQDLSRLYPEDGSYFQT 115
DP + P RS D+PLS S W FF+ E+ + +++D+ R +P D +F
Sbjct: 189 DPKIESPGALSRSEITHEDHPLSLGTTSLWNNFFKDTEVLEQIERDVMRTHP-DMHFFSG 247
Query: 116 PTC-----QAMLRRILLMWCLQHPEHGYRQGMHELLAPLVYVLQVDIDK 159
+ Q L+ IL ++ +P Y QGM+E+LAP+ Y+ + D DK
Sbjct: 248 DSAVAKSNQDALKNILTIFAKLNPGIRYVQGMNEILAPIFYIFKNDPDK 296
>AT1G04830.2 | chr1:1358782-1361844 REVERSE LENGTH=460
Length = 459
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 74 DNPLSQNPDSSWGRFFRGAELEKTVDQDLSRLYPEDGSYFQTPTC-----QAMLRRILLM 128
D+PLS S W +F+ E + +D+D+ R +P D +F + Q ++ ILL+
Sbjct: 203 DHPLSLGKASIWNTYFQDTETIEQIDRDVKRTHP-DIPFFSGESSFARSNQESMKNILLV 261
Query: 129 WCLQHPEHGYRQGMHELLAPLVYVLQVDIDK 159
+ + Y QGM+E+LAP+ YV + D D+
Sbjct: 262 FAKLNQGIRYVQGMNEILAPIFYVFRNDPDE 292
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 18,395,900
Number of extensions: 788506
Number of successful extensions: 2117
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2095
Number of HSP's successfully gapped: 7
Length of query: 834
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 727
Effective length of database: 8,173,057
Effective search space: 5941812439
Effective search space used: 5941812439
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 116 (49.3 bits)