BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0658900 Os06g0658900|009-126-G02
(143 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0658900 UbiA prenyltransferase family protein 282 7e-77
Os06g0646900 Similar to Homogentisic acid geranylgeranyl tr... 154 2e-38
Os07g0576000 UbiA prenyltransferase family protein 63 6e-11
>Os06g0658900 UbiA prenyltransferase family protein
Length = 143
Score = 282 bits (721), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 143/143 (100%), Positives = 143/143 (100%)
Query: 1 FDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGT 60
FDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGT
Sbjct: 1 FDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGT 60
Query: 61 AYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFM 120
AYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFM
Sbjct: 61 AYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFM 120
Query: 121 TFFSVVIALFKVIFCTYLEGNSL 143
TFFSVVIALFKVIFCTYLEGNSL
Sbjct: 121 TFFSVVIALFKVIFCTYLEGNSL 143
>Os06g0646900 Similar to Homogentisic acid geranylgeranyl transferase
Length = 278
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/133 (60%), Positives = 97/133 (72%)
Query: 1 FDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGT 60
+DI+IDKVNKP+LPLASGE+S ATG LV MS +G S PL ALFISF LG+
Sbjct: 44 YDIQIDKVNKPSLPLASGEFSVATGAVLVLTSLIMSIAIGIRSKSAPLLCALFISFFLGS 103
Query: 61 AYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFM 120
AYS++ P LRWKR+A +AA CIL VRAV+VQLAFF H+Q V +RP T+ ++FAT FM
Sbjct: 104 AYSVDAPLLRWKRNAFLAASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFM 163
Query: 121 TFFSVVIALFKVI 133
FS VIALFK I
Sbjct: 164 CCFSSVIALFKDI 176
>Os07g0576000 UbiA prenyltransferase family protein
Length = 379
Score = 63.2 bits (152), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 71/137 (51%), Gaps = 15/137 (10%)
Query: 1 FDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALF-ISFILG 59
+DI IDKVNKP LP+A+G+ S T LV FAA F + P +L+ + LG
Sbjct: 147 YDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIV-VTNFGPFITSLYCLGLFLG 205
Query: 60 TAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAV-----FTRPLI 114
T YS+ P R KR V A L I VR F L+ + R A+ ++ P+
Sbjct: 206 TIYSV--PPFRLKRYPVAAFLIIATVR------GFLLNFGVYYATRAALGLTFQWSSPVA 257
Query: 115 FATAFMTFFSVVIALFK 131
F T F+T F++VIA+ K
Sbjct: 258 FITCFVTLFALVIAITK 274
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.334 0.144 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,148,655
Number of extensions: 141291
Number of successful extensions: 607
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 3
Length of query: 143
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 52
Effective length of database: 12,284,327
Effective search space: 638785004
Effective search space used: 638785004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 151 (62.8 bits)