Os06g0658900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UbiA prenyltransferase family protein.
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Os06g0658900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UbiA prenyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.37 | 0.343 | 11.5 | -0.559 | 0.678 | 1.19 | -0.676 | 0.0676 | -0.589 | 16.3 | 23.14 | 9 | -- | -- |
| 53.37 | 0.34 | 11.5 | -0.571 | 0.678 | 1.19 | -0.663 | -- | -0.592 | 16.3 | 23.1 | 9 | -- | -- |
| 54.29 | 0.346 | 11.5 | -0.634 | 0.689 | 1.19 | -- | -0.493 | -0.607 | 16.2 | 23.14 | 9 | -- | -- |
| 54.45 | 0.346 | 11.5 | -0.561 | 0.695 | 1.15 | -- | -- | -0.585 | 16.2 | 23.14 | 9 | -- | -- |
| 70.56 | 0.391 | 11.5 | -0.826 | -- | 1.81 | -- | -1.24 | -0.692 | -- | 23.71 | 24 | -- | -- |
| 74.77 | 0.405 | 11.5 | -0.351 | 1.12 | -- | -0.161 | -- | -0.42 | 15.6 | -- | -- | -- | -- |
| 74.85 | 0.405 | 11.5 | -0.353 | 1.12 | -- | -- | -- | -0.421 | 15.6 | -- | -- | -- | -- |
| 71.45 | 0.394 | 11.5 | -0.677 | -- | 1.73 | -- | -- | -0.666 | -- | 23.63 | 27 | -- | -- |
| 62.24 | 0.369 | 11.5 | -- | 0.758 | 0.995 | -- | -- | -0.496 | 16 | 23.5 | 9 | -- | -- |
| 145.15 | 0.563 | 11.5 | -0.401 | -- | -- | -- | -- | -0.451 | -- | -- | -- | -- | -- |
| 78.14 | 0.414 | 11.4 | -- | 1.13 | -- | -- | -- | -0.382 | 15.6 | -- | -- | -- | -- |
| 83.02 | 0.424 | 11.5 | -- | -- | 1.63 | -- | -- | -0.561 | -- | 24.07 | 26 | -- | -- |
| 149.38 | 0.57 | 11.4 | -- | -- | -- | -- | -- | -0.407 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.27 | temperature | 15 | 270 | > th | dose dependent | sin | 3 | NA |
| 9 | 50.22 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 13 | 50.36 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 25 | 50.94 | temperature | 15 | 10 | > th | dose dependent | sin | 0 | NA |
| 31 | 51.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 56 | 51.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 65 | 51.89 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 78 | 52.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 18 |
| 92 | 52.49 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 94 | 52.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 111 | 52.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 113 | 52.82 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 16 |
| 121 | 52.90 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 15 |
| 132 | 53.02 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 176 | 53.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 212 | 53.66 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 249 | 54.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 280 | 54.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 284 | 54.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 13 |
| 285 | 54.25 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 368 | 54.61 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 379 | 54.63 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 388 | 54.65 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 462 | 54.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 14 |
| 593 | 55.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 18 |
| 674 | 55.46 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 726 | 55.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 763 | 55.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 798 | 55.77 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 894 | 55.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 901 | 56.00 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 905 | 56.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 20 |
| 930 | 56.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 21 |
| 964 | 56.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 990 | 56.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 7 |