BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0658900 Os06g0658900|009-126-G02
         (143 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18950.1  | chr2:8207491-8210047 FORWARD LENGTH=394            209   4e-55
AT3G11945.2  | chr3:3780041-3782880 REVERSE LENGTH=394             62   9e-11

>AT2G18950.1 | chr2:8207491-8210047 FORWARD LENGTH=394
          Length = 393

 Score =  209 bits (532), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 105/142 (73%), Positives = 123/142 (86%), Gaps = 2/142 (1%)

Query: 2   DIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGTA 61
           D+EIDKVNKP LPLASGEYS  TG+A+V++F+ MSF LGW VGS PLF ALF+SF+LGTA
Sbjct: 160 DVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTA 219

Query: 62  YSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFMT 121
           YSINLP LRWKR A+VAA+CILAVRA+IVQ+AF+LHIQT VF RP +FTRPLIFATAFM+
Sbjct: 220 YSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMS 279

Query: 122 FFSVVIALFKVIFCTYLEGNSL 143
           FFSVVIALFK I    +EG+ +
Sbjct: 280 FFSVVIALFKDI--PDIEGDKI 299



>AT3G11945.2 | chr3:3780041-3782880 REVERSE LENGTH=394
          Length = 393

 Score = 62.0 bits (149), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 7/133 (5%)

Query: 1   FDIEIDKVNKPTLPLASGEYSPATGVALVSAFA-AMSFGLGWAVGSQPLFLALF-ISFIL 58
           +DI IDKVNKP LP+A+G+ S  +   LV  FA A    +G+  G  P   +L+ +   L
Sbjct: 161 YDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFNFG--PFITSLYSLGLFL 218

Query: 59  GTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATA 118
           GT YS+  P LR KR  V A L I  VR  ++    + H        P  ++ P+ F T+
Sbjct: 219 GTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITS 275

Query: 119 FMTFFSVVIALFK 131
           F+T F++VIA+ K
Sbjct: 276 FVTLFALVIAITK 288



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.334    0.144    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,666,110
Number of extensions: 90304
Number of successful extensions: 397
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 2
Length of query: 143
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 54
Effective length of database: 8,666,545
Effective search space: 467993430
Effective search space used: 467993430
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 106 (45.4 bits)