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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0646900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Homogentisic acid geranylgeranyl transferase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.13 (0.0211) R2 : 0.0111
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.101 (0.0445) R2dN8 : 0.0144 R2N8 : 0.0111
σ : 0.398
deviance : 72.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
68.63 0.389 3.11 0.00291 0.0753 1.09 -0.431 -8.3 0.101 3.48 0.4997 11 -- --
67.98 0.387 3.13 -0.0128 0.0613 -1.82 -0.4 -- 0.104 3.77 0.4997 11 -- --
64.44 0.377 3.08 0.102 0.0749 10.3 -- -38.8 0.107 3.06 0.2927 11 -- --
68.4 0.388 3.13 -0.00653 0.0639 -1.79 -- -- 0.106 1.92 0.2927 11 -- --
64.76 0.377 3.08 0.104 -- 10.1 -- -38.3 0.109 -- 0.2927 11 -- --
72.06 0.398 3.13 0.0184 0.0738 -- -0.332 -- 0.1 3.65 -- -- -- --
72.33 0.398 3.13 0.0235 0.0765 -- -- -- 0.102 1.93 -- -- -- --
68.64 0.388 3.13 -0.00427 -- -1.81 -- -- 0.108 -- 0.2374 11 -- --
68.4 0.387 3.13 -- 0.0638 -1.78 -- -- 0.107 1.92 0.2927 11 -- --
72.68 0.398 3.13 0.0267 -- -- -- -- 0.104 -- -- -- -- --
72.34 0.398 3.13 -- 0.077 -- -- -- 0.0994 1.93 -- -- -- --
68.64 0.387 3.12 -- -- -1.81 -- -- 0.108 -- 0.2374 11 -- --
72.7 0.398 3.13 -- -- -- -- -- 0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.60 wind 7.0 30 > th dose independent rect. 19 1
3 62.46 wind 7.0 30 > th dose dependent rect. 19 1
20 64.79 precipitation 0.1 10 > th dose independent rect. 17 3
40 64.79 precipitation 0.1 10 > th dose dependent rect. 17 3
68 64.98 precipitation 0.1 10 > th dose independent rect. 19 1
78 64.98 precipitation 0.1 10 > th dose dependent rect. 19 1
95 65.39 wind 5.0 10 > th dose independent rect. 19 16
97 65.41 wind 5.0 10 > th dose dependent rect. 19 16
99 65.47 precipitation 0.1 10 > th dose dependent rect. 4 16
101 65.50 temperature 25.0 270 < th dose independent rect. 16 1
105 65.61 temperature 25.0 270 < th dose dependent rect. 16 1
106 65.62 precipitation 0.1 10 > th dose independent rect. 4 16
168 66.66 temperature 25.0 90 < th dose dependent rect. 18 1
194 67.10 precipitation 0.1 10 < th dose independent rect. 3 23
195 67.10 precipitation 0.1 10 < th dose dependent rect. 3 23
197 67.15 wind 5.0 10 > th dose independent rect. 19 13
198 67.16 precipitation 0.1 10 > th dose dependent sin 22 NA
200 67.18 wind 5.0 10 > th dose independent rect. 19 10
212 67.33 precipitation 0.1 10 > th dose independent sin 22 NA
215 67.34 temperature 25.0 270 < th dose dependent rect. 15 4
217 67.36 precipitation 0.1 10 < th dose independent sin 22 NA
218 67.36 precipitation 0.1 10 < th dose dependent sin 22 NA
221 67.37 temperature 25.0 270 < th dose independent rect. 15 4
249 67.64 precipitation 0.1 10 < th dose independent rect. 23 23
250 67.64 precipitation 0.1 10 < th dose dependent rect. 23 23
264 67.71 wind 5.0 10 > th dose dependent rect. 19 13
268 67.74 wind 5.0 10 > th dose dependent rect. 19 10
278 67.78 wind 5.0 10 > th dose dependent rect. 19 7
284 67.82 atmosphere 1005.0 270 > th dose dependent rect. 16 1
294 67.89 temperature 25.0 10 < th dose independent rect. 18 2
308 67.95 temperature 25.0 90 < th dose independent rect. 18 1
320 68.02 radiation 1.0 270 < th dose independent rect. 15 2
370 68.18 temperature 20.0 90 < th dose independent rect. 10 9
374 68.18 atmosphere 1005.0 270 > th dose dependent rect. 16 3
418 68.23 temperature 20.0 30 < th dose dependent rect. 11 9
603 68.57 humidity 90.0 90 > th dose independent rect. 18 1
623 68.65 atmosphere 1005.0 270 > th dose independent rect. 16 1
692 68.79 precipitation 0.1 10 < th dose independent rect. 11 23
694 68.79 precipitation 0.1 10 < th dose dependent rect. 11 23
742 68.89 atmosphere 1005.0 270 > th dose independent rect. 16 3
751 68.90 radiation 30.0 720 > th dose independent rect. 15 17
771 68.96 wind 9.0 1440 < th dose independent rect. 23 1
772 68.96 temperature 10.0 1440 > th dose independent rect. 23 1
775 68.96 temperature 30.0 1440 < th dose independent rect. 23 1
779 68.96 humidity 50.0 1440 > th dose independent rect. 23 1
789 68.96 atmosphere 995.0 1440 > th dose independent rect. 23 1
790 68.96 radiation 1.0 1440 < th dose independent rect. 23 1
811 68.96 temperature 10.0 1440 > th dose independent rect. 24 23
814 68.96 radiation 1.0 1440 < th dose dependent rect. 23 1
821 68.97 atmosphere 1005.0 30 > th dose dependent rect. 22 1
826 68.99 precipitation 0.1 10 < th dose independent rect. 21 23
827 68.99 precipitation 0.1 10 < th dose dependent rect. 21 23
828 69.00 atmosphere 1005.0 30 > th dose independent rect. 22 1
829 69.00 atmosphere 1005.0 270 > th dose independent rect. 15 5
839 69.02 humidity 80.0 30 > th dose independent rect. 22 1
843 69.03 precipitation 0.1 10 > th dose independent rect. 17 11
856 69.04 wind 3.0 30 < th dose independent rect. 22 1
857 69.04 temperature 20.0 30 > th dose independent rect. 22 1
859 69.04 wind 5.0 30 < th dose dependent rect. 22 1
876 69.07 precipitation 0.1 30 < th dose independent rect. 22 1
878 69.07 humidity 70.0 270 > th dose independent rect. 15 18
881 69.07 precipitation 0.1 30 < th dose dependent rect. 22 1
900 69.09 temperature 20.0 30 > th dose dependent rect. 22 1
903 69.10 temperature 20.0 30 > th dose independent rect. 2 1
907 69.10 temperature 10.0 30 > th dose dependent rect. 22 1
912 69.11 humidity 80.0 270 > th dose independent rect. 16 1
916 69.12 humidity 80.0 30 > th dose independent rect. 2 1
919 69.12 temperature 25.0 720 > th dose independent rect. 10 5
924 69.13 wind 7.0 30 < th dose independent rect. 22 1
926 69.13 temperature 10.0 30 > th dose independent rect. 22 1
928 69.13 temperature 30.0 30 < th dose independent rect. 22 1
929 69.13 humidity 50.0 30 > th dose independent rect. 22 1
933 69.13 atmosphere 1010.0 30 < th dose independent rect. 22 1
935 69.13 radiation 1.0 30 < th dose independent rect. 22 1
941 69.13 temperature 10.0 30 > th dose independent rect. 23 23
943 69.13 humidity 80.0 30 > th dose dependent rect. 2 1
944 69.13 humidity 50.0 30 > th dose dependent rect. 22 1
946 69.13 radiation 1.0 30 < th dose dependent rect. 22 1
953 69.14 wind 1.0 30 > th dose independent rect. 22 1
958 69.15 humidity 80.0 270 > th dose dependent rect. 16 1
962 69.16 humidity 90.0 30 < th dose independent rect. 22 1
963 69.16 temperature 25.0 720 < th dose independent rect. 8 11
965 69.16 temperature 10.0 30 > th dose dependent rect. 2 1
968 69.16 humidity 50.0 30 > th dose dependent rect. 2 1
970 69.16 atmosphere 1015.0 30 < th dose dependent rect. 2 1
971 69.17 atmosphere 1005.0 90 > th dose independent rect. 19 1
976 69.18 wind 5.0 30 < th dose independent rect. 2 1
979 69.18 temperature 10.0 30 > th dose independent rect. 2 1
981 69.18 temperature 30.0 30 < th dose independent rect. 2 1
982 69.18 humidity 50.0 30 > th dose independent rect. 2 1
985 69.18 atmosphere 995.0 30 > th dose independent rect. 2 1
986 69.18 atmosphere 1010.0 30 < th dose independent rect. 2 1
988 69.18 radiation 1.0 30 < th dose independent rect. 2 1
993 69.18 precipitation 0.1 30 < th dose independent rect. 2 1
994 69.18 temperature 10.0 30 > th dose independent rect. 3 23
995 69.18 radiation 1.0 30 < th dose dependent rect. 2 1
1000 69.18 precipitation 0.1 30 < th dose dependent rect. 2 1