BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0646900 Os06g0646900|AK063383
(278 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G18950.1 | chr2:8207491-8210047 FORWARD LENGTH=394 306 1e-83
AT3G11945.2 | chr3:3780041-3782880 REVERSE LENGTH=394 144 4e-35
AT3G51820.1 | chr3:19216301-19218934 REVERSE LENGTH=388 55 4e-08
>AT2G18950.1 | chr2:8207491-8210047 FORWARD LENGTH=394
Length = 393
Score = 306 bits (783), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 155/278 (55%), Positives = 200/278 (71%)
Query: 1 ITSVSLLPMRSLDDFTMKALWGFLEALSSSLCMNIYVVGLNQLYDIQIDKVNKPSLPLAS 60
I SVS L + + D + G LEA+ ++L MNIY+VGLNQL D++IDKVNKP LPLAS
Sbjct: 116 ILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLAS 175
Query: 61 GEFSVATGAVLVLTSLIMSIAIGIRSKSAPLLCALFISFFLGSAYSVDAPLLRWKRNAFL 120
GE+SV TG +V + IMS +G S PL ALF+SF LG+AYS++ PLLRWKR A +
Sbjct: 176 GEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALV 235
Query: 121 AASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDID 180
AA CIL VRA++VQ+AF+ H+Q HV RP+ T+ ++FAT FM FS VIALFKDIPDI+
Sbjct: 236 AAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIE 295
Query: 181 GDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLAFA 240
GD+ FG+ S SV LG +RV+W C+ +L AY AIL GA+S + +I+V GH +LA
Sbjct: 296 GDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATT 355
Query: 241 LWQRAQHCDVENKAWITSFYMFIWKLFYAEYFLIPFVQ 278
LW RA+ D+ +K ITS YMFIWKLFYAEY L+PF++
Sbjct: 356 LWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPFLK 393
>AT3G11945.2 | chr3:3780041-3782880 REVERSE LENGTH=394
Length = 393
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/268 (36%), Positives = 147/268 (54%), Gaps = 19/268 (7%)
Query: 17 MKALWGFLEALSSSLCMNIYVVGLNQLYDIQIDKVNKPSLPLASGEFSVATGAVLVLTSL 76
+KAL G L + +C N Y+VG+NQ+YDI IDKVNKP LP+A+G+ SV + +LV+
Sbjct: 138 LKALSGLL----ALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFA 193
Query: 77 IMSIAIGIRSKSAPLLCALF-ISFFLGSAYSVDAPLLRWKRNAFLAASCILFVRAVLVQL 135
I + + + P + +L+ + FLG+ YSV P LR KR A I VR L+
Sbjct: 194 IAGLLV-VGFNFGPFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNF 250
Query: 136 AFFAHMQQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDIDGDRHFGVESLSVRLG 195
+ H + L P + V F T F+ F+ VIA+ KD+PD++GDR F + +L+ +LG
Sbjct: 251 GVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLG 309
Query: 196 PERVYWLCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLA----FALW--QRAQHCD 249
+ +L +LL Y +AI + + + + H +LA F W ++A +
Sbjct: 310 VRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYT- 368
Query: 250 VENKAWITSFYMFIWKLFYAEYFLIPFV 277
K I+ +Y FIW LFYAEY L PF+
Sbjct: 369 ---KEAISGYYRFIWNLFYAEYLLFPFL 393
>AT3G51820.1 | chr3:19216301-19218934 REVERSE LENGTH=388
Length = 387
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 78/183 (42%), Gaps = 12/183 (6%)
Query: 29 SSLCMNIYVVGLNQLYDIQIDKVNKPSLPLASGEFSVAT--GAVLVLTSLIMSIAIGIRS 86
S C+ Y +N YD ID +N+P P+ SG S V VL + IA +
Sbjct: 143 SGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISEPEVITQVWVLLLGGLGIAGILDV 202
Query: 87 KSAPLLCALFISFFLGS--AYSVDAPLLRWKRNAFLAASCILFVRAVLVQLAFFAHMQQH 144
+ +F GS +Y AP L+ K+N ++ + A + L ++A
Sbjct: 203 WAGHTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVGN---FALGASYISLPWWAG---Q 256
Query: 145 VLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGPERVYWLCI 204
L L P VV TL IA+ D ++GDR G++SL V G E W+C+
Sbjct: 257 ALFGTLTP--DVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGTETAKWICV 314
Query: 205 NIL 207
+
Sbjct: 315 GAI 317
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.331 0.140 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,543,436
Number of extensions: 204696
Number of successful extensions: 571
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 3
Length of query: 278
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 181
Effective length of database: 8,447,217
Effective search space: 1528946277
Effective search space used: 1528946277
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 111 (47.4 bits)