BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0646900 Os06g0646900|AK063383
         (278 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0646900  Similar to Homogentisic acid geranylgeranyl tr...   565   e-161
Os06g0658900  UbiA prenyltransferase family protein               154   6e-38
Os07g0576000  UbiA prenyltransferase family protein               135   3e-32

>Os06g0646900 Similar to Homogentisic acid geranylgeranyl transferase
          Length = 278

 Score =  565 bits (1455), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 278/278 (100%), Positives = 278/278 (100%)

Query: 1   ITSVSLLPMRSLDDFTMKALWGFLEALSSSLCMNIYVVGLNQLYDIQIDKVNKPSLPLAS 60
           ITSVSLLPMRSLDDFTMKALWGFLEALSSSLCMNIYVVGLNQLYDIQIDKVNKPSLPLAS
Sbjct: 1   ITSVSLLPMRSLDDFTMKALWGFLEALSSSLCMNIYVVGLNQLYDIQIDKVNKPSLPLAS 60

Query: 61  GEFSVATGAVLVLTSLIMSIAIGIRSKSAPLLCALFISFFLGSAYSVDAPLLRWKRNAFL 120
           GEFSVATGAVLVLTSLIMSIAIGIRSKSAPLLCALFISFFLGSAYSVDAPLLRWKRNAFL
Sbjct: 61  GEFSVATGAVLVLTSLIMSIAIGIRSKSAPLLCALFISFFLGSAYSVDAPLLRWKRNAFL 120

Query: 121 AASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDID 180
           AASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDID
Sbjct: 121 AASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDID 180

Query: 181 GDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLAFA 240
           GDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLAFA
Sbjct: 181 GDRHFGVESLSVRLGPERVYWLCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLAFA 240

Query: 241 LWQRAQHCDVENKAWITSFYMFIWKLFYAEYFLIPFVQ 278
           LWQRAQHCDVENKAWITSFYMFIWKLFYAEYFLIPFVQ
Sbjct: 241 LWQRAQHCDVENKAWITSFYMFIWKLFYAEYFLIPFVQ 278



>Os06g0658900 UbiA prenyltransferase family protein
          Length = 143

 Score =  154 bits (389), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 81/133 (60%), Positives = 97/133 (72%)

Query: 44  YDIQIDKVNKPSLPLASGEFSVATGAVLVLTSLIMSIAIGIRSKSAPLLCALFISFFLGS 103
           +DI+IDKVNKP+LPLASGE+S ATG  LV     MS  +G    S PL  ALFISF LG+
Sbjct: 1   FDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSFGLGWAVGSQPLFLALFISFILGT 60

Query: 104 AYSVDAPLLRWKRNAFLAASCILFVRAVLVQLAFFAHMQQHVLKRPLAPTKSVVFATLFM 163
           AYS++ P LRWKR+A +AA CIL VRAV+VQLAFF H+Q  V +RP   T+ ++FAT FM
Sbjct: 61  AYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFRRPAVFTRPLIFATAFM 120

Query: 164 CCFSSVIALFKDI 176
             FS VIALFK I
Sbjct: 121 TFFSVVIALFKVI 133



>Os07g0576000 UbiA prenyltransferase family protein
          Length = 379

 Score =  135 bits (340), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/267 (34%), Positives = 142/267 (53%), Gaps = 19/267 (7%)

Query: 18  KALWGFLEALSSSLCMNIYVVGLNQLYDIQIDKVNKPSLPLASGEFSVATGAVLVLTSLI 77
           KA +G    L + +C N Y+VG+NQ+YDI+IDKVNKP LP+A+G+ SV T  +LV+    
Sbjct: 125 KAFYG----LVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAA 180

Query: 78  MSIAIGIRSKSAPLLCALF-ISFFLGSAYSVDAPLLRWKRNAFLAASCILFVRAVLVQLA 136
              +I + +   P + +L+ +  FLG+ YSV  P  R KR    A   I  VR  L+   
Sbjct: 181 AGFSI-VVTNFGPFITSLYCLGLFLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFG 237

Query: 137 FFAHMQQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGP 196
            + +  +  L      +  V F T F+  F+ VIA+ KD+PD++GDR + + +L+ +LG 
Sbjct: 238 VY-YATRAALGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGV 296

Query: 197 ERVYWLCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLA----FALW--QRAQHCDV 250
             + +L   +L+  Y AAI          +  + V  H  LA    F  W  ++A++   
Sbjct: 297 RNIAFLGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKY--- 353

Query: 251 ENKAWITSFYMFIWKLFYAEYFLIPFV 277
             K  I+ +Y FIW LFYAEY   P +
Sbjct: 354 -TKDAISQYYRFIWNLFYAEYIFFPLI 379



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.331    0.140    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,490,720
Number of extensions: 308979
Number of successful extensions: 781
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 779
Number of HSP's successfully gapped: 3
Length of query: 278
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 178
Effective length of database: 11,814,401
Effective search space: 2102963378
Effective search space used: 2102963378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 155 (64.3 bits)