Os07g0576000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UbiA prenyltransferase family protein.
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Os07g0576000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UbiA prenyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.49 | 0.449 | 11.3 | -1.44 | 0.8 | -0.598 | -0.0506 | 0.832 | -1.14 | 8.7 | 3 | 7 | -- | -- |
| 97.8 | 0.461 | 11.2 | -1.32 | 0.711 | -0.408 | -0.26 | -- | -0.986 | 7.96 | 35 | 8 | -- | -- |
| 97.59 | 0.46 | 11.2 | -1.34 | 0.696 | -0.502 | -- | -0.257 | -0.972 | 8.08 | 35.88 | 9 | -- | -- |
| 97.56 | 0.46 | 11.2 | -1.34 | 0.706 | -0.53 | -- | -- | -0.978 | 7.76 | 35.79 | 9 | -- | -- |
| 123.32 | 0.517 | 11.3 | -1.33 | -- | -0.685 | -- | -0.224 | -0.966 | -- | 35.78 | 10 | -- | -- |
| 106.03 | 0.483 | 11.2 | -1.34 | 0.789 | -- | -0.082 | -- | -0.992 | 8.56 | -- | -- | -- | -- |
| 106.05 | 0.482 | 11.2 | -1.34 | 0.79 | -- | -- | -- | -0.992 | 8.56 | -- | -- | -- | -- |
| 123.48 | 0.518 | 11.3 | -1.33 | -- | -0.688 | -- | -- | -0.967 | -- | 35.82 | 10 | -- | -- |
| 144.6 | 0.56 | 11.2 | -- | 0.688 | -0.577 | -- | -- | -0.819 | 7.76 | 39.15 | 8 | -- | -- |
| 141.05 | 0.555 | 11.3 | -1.34 | -- | -- | -- | -- | -0.985 | -- | -- | -- | -- | -- |
| 153.43 | 0.579 | 11.2 | -- | 0.785 | -- | -- | -- | -0.843 | 8.69 | -- | -- | -- | -- |
| 168.17 | 0.604 | 11.2 | -- | -- | -0.911 | -- | -- | -0.835 | -- | 39.76 | 49 | -- | -- |
| 188.27 | 0.64 | 11.2 | -- | -- | -- | -- | -- | -0.836 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.69 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 86.17 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 86.95 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 5 | 87.01 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 7 | 87.05 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 8 | 87.05 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 12 | 87.13 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 17 | 87.28 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 22 | 87.35 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 26 | 87.41 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 31 | 87.47 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 38 | 87.55 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 45 | 87.66 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 106 | 88.32 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 115 | 88.41 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 128 | 88.50 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 135 | 88.54 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 190 | 88.85 | radiation | 20 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 199 | 88.90 | temperature | 20 | 14400 | > th | dose independent | sin | 14 | NA |
| 217 | 88.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 235 | 89.03 | wind | 9 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 246 | 89.07 | temperature | 20 | 14400 | < th | dose independent | sin | 14 | NA |
| 260 | 89.09 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 16 |
| 284 | 89.17 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 328 | 89.27 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 8 |
| 342 | 89.30 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 388 | 89.39 | wind | 1 | 43200 | > th | dose dependent | rect. | 21 | 12 |
| 399 | 89.41 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 21 |
| 401 | 89.42 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 9 |
| 413 | 89.43 | atmosphere | 995 | 43200 | < th | dose dependent | sin | 17 | NA |
| 448 | 89.50 | wind | 9 | 43200 | < th | dose dependent | sin | 7 | NA |
| 485 | 89.55 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 8 |
| 496 | 89.57 | wind | 5 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 532 | 89.63 | atmosphere | 995 | 43200 | < th | dose independent | sin | 5 | NA |
| 549 | 89.65 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 559 | 89.67 | wind | 5 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 577 | 89.69 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 21 | 18 |
| 585 | 89.70 | wind | 1 | 43200 | > th | dose dependent | sin | 7 | NA |
| 630 | 89.75 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 656 | 89.78 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 663 | 89.79 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 686 | 89.81 | wind | 3 | 43200 | > th | dose dependent | rect. | 17 | 16 |
| 713 | 89.86 | atmosphere | 995 | 43200 | > th | dose independent | sin | 5 | NA |
| 724 | 89.87 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 750 | 89.90 | temperature | 10 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 827 | 89.98 | humidity | 90 | 14400 | > th | dose dependent | rect. | 7 | 22 |
| 860 | 90.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 16 |
| 866 | 90.04 | wind | 5 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 885 | 90.05 | temperature | 30 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 893 | 90.06 | temperature | 10 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 907 | 90.08 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 17 |
| 920 | 90.09 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 14 |
| 933 | 90.11 | wind | 1 | 43200 | > th | dose independent | rect. | 22 | 9 |
| 940 | 90.11 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 9 |
| 953 | 90.12 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 980 | 90.14 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 5 |