BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0576000 Os07g0576000|AK072012
         (379 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os07g0576000  UbiA prenyltransferase family protein               694   0.0  
Os06g0646900  Similar to Homogentisic acid geranylgeranyl tr...   135   5e-32

>Os07g0576000 UbiA prenyltransferase family protein
          Length = 379

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/379 (92%), Positives = 352/379 (92%)

Query: 1   MASLASPPLPCRAAATASXXXXXXXXXXXXXXXXXXXXXXXXXXXFPRAPCNAARWSRRD 60
           MASLASPPLPCRAAATAS                           FPRAPCNAARWSRRD
Sbjct: 1   MASLASPPLPCRAAATASRSGRPAPRLLGPPPPPASPLLSSASARFPRAPCNAARWSRRD 60

Query: 61  AVRVCSQAGAAGPAPLSKTLSDLKDSCWRFLRPHTIRGTALGSIALVARALIENPQLINW 120
           AVRVCSQAGAAGPAPLSKTLSDLKDSCWRFLRPHTIRGTALGSIALVARALIENPQLINW
Sbjct: 61  AVRVCSQAGAAGPAPLSKTLSDLKDSCWRFLRPHTIRGTALGSIALVARALIENPQLINW 120

Query: 121 WLVFKAFYGLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAA 180
           WLVFKAFYGLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAA
Sbjct: 121 WLVFKAFYGLVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAA 180

Query: 181 AGFSIVVTNFGPFITSLYCLGLFLGTIYSVPPFRLKRYPVAAFLIIATVRGFLLNFGVYY 240
           AGFSIVVTNFGPFITSLYCLGLFLGTIYSVPPFRLKRYPVAAFLIIATVRGFLLNFGVYY
Sbjct: 181 AGFSIVVTNFGPFITSLYCLGLFLGTIYSVPPFRLKRYPVAAFLIIATVRGFLLNFGVYY 240

Query: 241 ATRAALGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIA 300
           ATRAALGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIA
Sbjct: 241 ATRAALGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIA 300

Query: 301 FLGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQ 360
           FLGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQ
Sbjct: 301 FLGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQ 360

Query: 361 YYRFIWNLFYAEYIFFPLI 379
           YYRFIWNLFYAEYIFFPLI
Sbjct: 361 YYRFIWNLFYAEYIFFPLI 379



>Os06g0646900 Similar to Homogentisic acid geranylgeranyl transferase
          Length = 278

 Score =  135 bits (340), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/267 (34%), Positives = 142/267 (53%), Gaps = 19/267 (7%)

Query: 125 KAFYG----LVALICGNGYIVGINQIYDIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAA 180
           KA +G    L + +C N Y+VG+NQ+YDI+IDKVNKP LP+A+G+ SV T  +LV+    
Sbjct: 18  KALWGFLEALSSSLCMNIYVVGLNQLYDIQIDKVNKPSLPLASGEFSVATGAVLVLTSLI 77

Query: 181 AGFSI-VVTNFGPFITSLYCLGLFLGTIYSV--PPFRLKRYPVAAFLIIATVRGFLLNFG 237
              +I + +   P + +L+ +  FLG+ YSV  P  R KR    A   I  VR  L+   
Sbjct: 78  MSIAIGIRSKSAPLLCALF-ISFFLGSAYSVDAPLLRWKRNAFLAASCILFVRAVLVQLA 136

Query: 238 VY-YATRAALGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGDRKYQISTLATKLGV 296
            + +  +  L      +  V F T F+  F+ VIA+ KD+PD++GDR + + +L+ +LG 
Sbjct: 137 FFAHMQQHVLKRPLAPTKSVVFATLFMCCFSSVIALFKDIPDIDGDRHFGVESLSVRLGP 196

Query: 297 RNIAFLGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGIIFQTWVLEQAKY--- 353
             + +L   +L+  Y AAI          +  + V  H  LA    F  W  ++A++   
Sbjct: 197 ERVYWLCINILLTAYGAAILAGASSTNLCQMIITVFGHGLLA----FALW--QRAQHCDV 250

Query: 354 -TKDAISQYYRFIWNLFYAEYIFFPLI 379
             K  I+ +Y FIW LFYAEY   P +
Sbjct: 251 ENKAWITSFYMFIWKLFYAEYFLIPFV 277



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.330    0.141    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,463,170
Number of extensions: 422496
Number of successful extensions: 1278
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1273
Number of HSP's successfully gapped: 4
Length of query: 379
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 276
Effective length of database: 11,657,759
Effective search space: 3217541484
Effective search space used: 3217541484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 157 (65.1 bits)