BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0612900 Os06g0612900|Os06g0612900
(717 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0612900 Protein of unknown function DUF1680 family pro... 1339 0.0
Os02g0195500 Protein of unknown function DUF1680 family pro... 979 0.0
Os06g0613000 Conserved hypothetical protein 159 8e-39
Os03g0189700 87 6e-17
Os01g0286500 82 1e-15
>Os06g0612900 Protein of unknown function DUF1680 family protein
Length = 717
Score = 1339 bits (3466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 667/717 (93%), Positives = 667/717 (93%)
Query: 1 MWASTHNGTLAGKMAAVVDALHDCQAAAGTGYLSAFPAEFFDRFEAIRPVWAPYYTIHKA 60
MWASTHNGTLAGKMAAVVDALHDCQAAAGTGYLSAFPAEFFDRFEAIRPVWAPYYTIHKA
Sbjct: 1 MWASTHNGTLAGKMAAVVDALHDCQAAAGTGYLSAFPAEFFDRFEAIRPVWAPYYTIHKA 60
Query: 61 RNATQSICISTMAMNLICSCKCLNEIMQGLLDQHTVAGNGKALGMVVAMADYFAGRVRSV 120
RNATQSICISTMAMNLICSCKCLNEIMQGLLDQHTVAGNGKALGMVVAMADYFAGRVRSV
Sbjct: 61 RNATQSICISTMAMNLICSCKCLNEIMQGLLDQHTVAGNGKALGMVVAMADYFAGRVRSV 120
Query: 121 IQRYTIERHWTSLNEETGGMNDVLYQLYTITKDQRHLVLAHLFDKPCFLGLLAVQADSLS 180
IQRYTIERHWTSLNEETGGMNDVLYQLYTITKDQRHLVLAHLFDKPCFLGLLAVQADSLS
Sbjct: 121 IQRYTIERHWTSLNEETGGMNDVLYQLYTITKDQRHLVLAHLFDKPCFLGLLAVQADSLS 180
Query: 181 GFHANTHIPVVIGGQMRYEVTGDPLYKEIATFFMDIVNSSHSYATGGTSVSEFWSNPKHX 240
GFHANTHIPVVIGGQMRYEVTGDPLYKEIATFFMDIVNSSHSYATGGTSVSEFWSNPKH
Sbjct: 181 GFHANTHIPVVIGGQMRYEVTGDPLYKEIATFFMDIVNSSHSYATGGTSVSEFWSNPKHL 240
Query: 241 XXXXXXXXXXSCTTYNMLKVSRHLFRWTKEIAYADYYERALINGVLSIQRGRDPGVMIYM 300
SCTTYNMLKVSRHLFRWTKEIAYADYYERALINGVLSIQRGRDPGVMIYM
Sbjct: 241 AEALTTETEESCTTYNMLKVSRHLFRWTKEIAYADYYERALINGVLSIQRGRDPGVMIYM 300
Query: 301 LPQGPGRSKAVSYHGWGTQYNSFWCCYGTGIESFSKLGDSIYFEQKGDKPGLYIIQYIPS 360
LPQGPGRSKAVSYHGWGTQYNSFWCCYGTGIESFSKLGDSIYFEQKGDKPGLYIIQYIPS
Sbjct: 301 LPQGPGRSKAVSYHGWGTQYNSFWCCYGTGIESFSKLGDSIYFEQKGDKPGLYIIQYIPS 360
Query: 361 TFNWRTAGLTVTQQVKPLSSSDQYLQVSLSISAAKTNGQYATLNVRIPSWTSMNGAKATL 420
TFNWRTAGLTVTQQVKPLSSSDQYLQVSLSISAAKTNGQYATLNVRIPSWTSMNGAKATL
Sbjct: 361 TFNWRTAGLTVTQQVKPLSSSDQYLQVSLSISAAKTNGQYATLNVRIPSWTSMNGAKATL 420
Query: 421 NDKDLQLASPGTFLTISKQWDSGDDHLLLQFPINLRTEAIKDDRPQVASLNAILFGPFLL 480
NDKDLQLASPGTFLTISKQWDSGDDHLLLQFPINLRTEAIKDDRPQVASLNAILFGPFLL
Sbjct: 421 NDKDLQLASPGTFLTISKQWDSGDDHLLLQFPINLRTEAIKDDRPQVASLNAILFGPFLL 480
Query: 481 AGLTTGDWDAKTGGAATAASDWITPVPASYNSQLVTLTQESGGKTMLLSTVNDTSLAMLE 540
AGLTTGDWDAKTGGAATAASDWITPVPASYNSQLVTLTQESGGKTMLLSTVNDTSLAMLE
Sbjct: 481 AGLTTGDWDAKTGGAATAASDWITPVPASYNSQLVTLTQESGGKTMLLSTVNDTSLAMLE 540
Query: 541 RPEGAGGTDAAVRATFRVVPPGSXXXXXXXXXXXXXXXXXXXKVAAATIEPFGLPGTAVS 600
RPEGAGGTDAAVRATFRVVPPGS KVAAATIEPFGLPGTAVS
Sbjct: 541 RPEGAGGTDAAVRATFRVVPPGSRAELRQRAGAGAGEGAARLKVAAATIEPFGLPGTAVS 600
Query: 601 NGLAVVRAGNSSSTLFNVAPGLDGKPGSVSLELGSKPGCFLVAGAGAKVHVGCRTRGXXX 660
NGLAVVRAGNSSSTLFNVAPGLDGKPGSVSLELGSKPGCFLVAGAGAKVHVGCRTRG
Sbjct: 601 NGLAVVRAGNSSSTLFNVAPGLDGKPGSVSLELGSKPGCFLVAGAGAKVHVGCRTRGGAA 660
Query: 661 XXXXXXXXXXXXXXXXXPLRRYHAISFFASGVRRSFLLEPLFTLRDEFYTIYFNLAA 717
PLRRYHAISFFASGVRRSFLLEPLFTLRDEFYTIYFNLAA
Sbjct: 661 AAAAAGFEQAASFAQAEPLRRYHAISFFASGVRRSFLLEPLFTLRDEFYTIYFNLAA 717
>Os02g0195500 Protein of unknown function DUF1680 family protein
Length = 891
Score = 979 bits (2530), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/721 (67%), Positives = 549/721 (76%), Gaps = 47/721 (6%)
Query: 1 MWASTHNGTLAGKMAAVVDALHDCQAAAGTGYLSAFPAEFFDRFEAIRPVWAPYYTIHKA 60
MWASTHN TL KM++VVDALHDCQ G+GYLSAFP+EFFDR E+I+ VWAPYYTIHK
Sbjct: 214 MWASTHNDTLLAKMSSVVDALHDCQKKMGSGYLSAFPSEFFDRVESIKAVWAPYYTIHK- 272
Query: 61 RNATQSICISTMAMNLICSCKCLNEIMQGLLDQHTVAGNGKALGMVVAMADYFAGRVRSV 120
IMQGLLDQ+TVAGN KAL +VV MA+YF+ RV++V
Sbjct: 273 -------------------------IMQGLLDQYTVAGNSKALDLVVGMANYFSDRVKNV 307
Query: 121 IQRYTIERHWTSLNEETGGMNDVLYQLYTITKDQRHLVLAHLFDKPCFLGLLAVQADSLS 180
IQ+Y+IERHW SLNEE+GGMNDVLYQLYTIT DQ+HL LAHLFDKPCFLGLLAVQADS+S
Sbjct: 308 IQKYSIERHWASLNEESGGMNDVLYQLYTITNDQKHLTLAHLFDKPCFLGLLAVQADSIS 367
Query: 181 GFHANTHIPVVIGGQMRYEVTGDPLYKEIATFFMDIVNSSHSYATGGTSVSEFWSNPKHX 240
GFH+NTHIPVVIG QMRYEVTGD LYK+IATFFMD +NSSHSYATGGTS EFW+NPK
Sbjct: 368 GFHSNTHIPVVIGAQMRYEVTGDLLYKQIATFFMDTINSSHSYATGGTSAGEFWTNPKRL 427
Query: 241 XXXXXXXXXXSCTTYNMLKVSRHLFRWTKEIAYADYYERALINGVLSIQRGRDPGVMIYM 300
SCTTYNMLKVSR+LFRWTKE++YADYYERALINGVLSIQRG DPGVMIYM
Sbjct: 428 ADTLSTENEESCTTYNMLKVSRNLFRWTKELSYADYYERALINGVLSIQRGTDPGVMIYM 487
Query: 301 LPQGPGRSKAVSYHGWGTQYNSFWCCYGTGIESFSKLGDSIYFEQKGDKPGLYIIQYIPS 360
LPQ PGRSKAVSYHGWGT+Y+SFWCCYGTGIESFSKLGDSIYFE+KGD+P L IIQYIPS
Sbjct: 488 LPQAPGRSKAVSYHGWGTKYDSFWCCYGTGIESFSKLGDSIYFEEKGDRPVLNIIQYIPS 547
Query: 361 TFNWRTAGLTVTQQVKPLSSSDQYLQVSLSISAAKTNGQYATLNVRIPSWTSMNGAKATL 420
+NW+ AGLTV QQ+KP+SS D +LQVSLS S AKTNGQ ATLNVRIPSWTS NGAKATL
Sbjct: 548 AYNWKAAGLTVNQQLKPISSLDMFLQVSLSTS-AKTNGQSATLNVRIPSWTSANGAKATL 606
Query: 421 NDKDLQLASPGTFLTISKQWDSGDDHLLLQFPINLRTEAIKDDRPQVASLNAILFGPFLL 480
ND DL L SPG+FL+ISKQW+S DDHL LQFPI LRTEAIKDDRP+ ASL AILFGPF+L
Sbjct: 607 NDNDLGLMSPGSFLSISKQWNS-DDHLSLQFPITLRTEAIKDDRPEYASLQAILFGPFVL 665
Query: 481 AGLTTGDWDAKTGGAATAASDWITPVPASYNSQLVTLTQESGGKTMLLSTVNDTSLAMLE 540
AGL+TGDW+A+ G +A SDWI+PVP+SYNSQLVT TQES GKT +LS+ N SL M E
Sbjct: 666 AGLSTGDWNAEAGN-TSAISDWISPVPSSYNSQLVTFTQESSGKTFVLSSANG-SLTMQE 723
Query: 541 RPEGAGGTDAAVRATFRVVPPGSXXXXXXXXXXXXXXXXXXXKVAAATIEPFGLPGTAVS 600
RP GTD A+ ATFRV P S K + IEPF LPGT ++
Sbjct: 724 RPT-VDGTDTAIHATFRVHPQDS--------AGQLDTQGATLKGTSVQIEPFDLPGTVIT 774
Query: 601 NGLAVVRAGNSSSTLFNVAPGLDGKPGSVSLELGSKPGCFLVAG----AGAKVHVGCRTR 656
N L A SS +LFN+ PGLDG P SVSLELG+KPGCFLV G G K+ V C++
Sbjct: 775 NNL-TQSAQKSSDSLFNIVPGLDGNPNSVSLELGTKPGCFLVIGVDYSVGTKIQVSCKS- 832
Query: 657 GXXXXXXXXXXXXXXXXXXXXPLRRYHAISFFASGVRRSFLLEPLFTLRDEFYTIYFNLA 716
PLR+YH ISF A GV+R+FLLEPL++LRDEFYT+YFNL
Sbjct: 833 --SLPSINGIFEQAASFVQAAPLRQYHPISFIAKGVKRNFLLEPLYSLRDEFYTVYFNLG 890
Query: 717 A 717
A
Sbjct: 891 A 891
>Os06g0613000 Conserved hypothetical protein
Length = 279
Score = 159 bits (402), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 143/291 (49%), Gaps = 51/291 (17%)
Query: 460 IKDDRPQVASLNAILFGPFLLAGLTTGDWDAKTGGAATAASDWITP-------------- 505
DDRP+ +S+ A+LFGP LLAGLT G+ KT + ++ +TP
Sbjct: 2 FSDDRPEYSSIQAVLFGPHLLAGLTHGNQTVKT---SNDSNSGLTPGVWEVNATHAAAAV 58
Query: 506 ------VPASYNSQLVTLTQESGGKT-----MLLSTVNDTSLAMLERPEGAGGTDAAVRA 554
V S NSQLVTLTQ G +L ++ D +L M E P G+DA V A
Sbjct: 59 AVWVTPVSQSLNSQLVTLTQRDGDAQAAAAFVLSVSIADGALTMQESP--VAGSDACVHA 116
Query: 555 TFRVV--PPGSXXXXXXXXXXXXXXXXXXXKVAAATIEPFGLPGTAVSNGLAVVRAGNSS 612
TFR P G+ +EPF PG AV++ L+V R G
Sbjct: 117 TFRAYHSPSGASAIDAATGRLQGRD---------VALEPFDRPGMAVTDALSVGRPG--P 165
Query: 613 STLFNVAPGLDGKPGSVSLELGSKPGCFLVAG-----AGAKVHVGCR---TRGXXXXXXX 664
+T FN GLDG PG+VSLEL ++PGCF+ A AGAK V CR G
Sbjct: 166 ATRFNAVAGLDGLPGTVSLELATRPGCFVAAPTTAYLAGAKAQVSCRKPTAAGGGEDDDD 225
Query: 665 XXXXXXXXXXXXXPLRRYHAISFFASGVRRSFLLEPLFTLRDEFYTIYFNL 715
PLR YH +SF A+G R+FLLEPL +L+DEFYT+YFN+
Sbjct: 226 TAFRRAASFTQAAPLRLYHPLSFSATGTDRNFLLEPLQSLQDEFYTVYFNV 276
>Os03g0189700
Length = 100
Score = 86.7 bits (213), Expect = 6e-17, Method: Composition-based stats.
Identities = 39/43 (90%), Positives = 41/43 (95%)
Query: 615 LFNVAPGLDGKPGSVSLELGSKPGCFLVAGAGAKVHVGCRTRG 657
+FNV PGLDGKPGSVSLELGSKPGCFLVAGAGAKV VGCR+RG
Sbjct: 51 MFNVVPGLDGKPGSVSLELGSKPGCFLVAGAGAKVQVGCRSRG 93
>Os01g0286500
Length = 105
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/43 (86%), Positives = 39/43 (90%)
Query: 615 LFNVAPGLDGKPGSVSLELGSKPGCFLVAGAGAKVHVGCRTRG 657
+FNV PGLDGKPGSVSLELGSKPGCFLVAGA KV VGCR+RG
Sbjct: 51 MFNVVPGLDGKPGSVSLELGSKPGCFLVAGASTKVQVGCRSRG 93
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,450,444
Number of extensions: 940736
Number of successful extensions: 1872
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1857
Number of HSP's successfully gapped: 5
Length of query: 717
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 609
Effective length of database: 11,396,689
Effective search space: 6940583601
Effective search space used: 6940583601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)