BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0607200 Os06g0607200|J065186F21
(120 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0607200 Cellular retinaldehyde-binding/triple function... 252 5e-68
Os02g0200000 Cellular retinaldehyde binding/alpha-tocophero... 138 7e-34
Os09g0258000 Cellular retinaldehyde-binding/triple function... 125 8e-30
>Os06g0607200 Cellular retinaldehyde-binding/triple function, C-terminal domain
containing protein
Length = 120
Score = 252 bits (643), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 120/120 (100%), Positives = 120/120 (100%)
Query: 1 DTACWIIRILKGVLLFFQGIPVFAIGVGQSTYDKASVHYYVQSHIQINEYRDRIVLPMAS 60
DTACWIIRILKGVLLFFQGIPVFAIGVGQSTYDKASVHYYVQSHIQINEYRDRIVLPMAS
Sbjct: 1 DTACWIIRILKGVLLFFQGIPVFAIGVGQSTYDKASVHYYVQSHIQINEYRDRIVLPMAS 60
Query: 61 KKFGRPISTCIKVLDMTGLKLSALNQMKVLHTWTWHIQMFNFCIRSAYHEQLSIICAASD 120
KKFGRPISTCIKVLDMTGLKLSALNQMKVLHTWTWHIQMFNFCIRSAYHEQLSIICAASD
Sbjct: 61 KKFGRPISTCIKVLDMTGLKLSALNQMKVLHTWTWHIQMFNFCIRSAYHEQLSIICAASD 120
>Os02g0200000 Cellular retinaldehyde binding/alpha-tocopherol transport family
protein
Length = 327
Score = 138 bits (348), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 72/73 (98%)
Query: 18 QGIPVFAIGVGQSTYDKASVHYYVQSHIQINEYRDRIVLPMASKKFGRPISTCIKVLDMT 77
+G+PVFA+GVGQSTYDKASVHYYVQSHIQINEYRDR++LPM ++KFGRP++TC+KVLDMT
Sbjct: 100 EGLPVFAVGVGQSTYDKASVHYYVQSHIQINEYRDRVILPMLTEKFGRPVTTCVKVLDMT 159
Query: 78 GLKLSALNQMKVL 90
GLKLSAL+QMK+L
Sbjct: 160 GLKLSALSQMKML 172
>Os09g0258000 Cellular retinaldehyde-binding/triple function, N-terminal domain
containing protein
Length = 335
Score = 125 bits (313), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 59/77 (76%), Positives = 68/77 (88%)
Query: 18 QGIPVFAIGVGQSTYDKASVHYYVQSHIQINEYRDRIVLPMASKKFGRPISTCIKVLDMT 77
QG PV+A GVG ST DKASVHYYVQSHIQ+NEYRDR+VLP ASK FG+ I+TC+KV+DMT
Sbjct: 100 QGQPVYAFGVGLSTLDKASVHYYVQSHIQMNEYRDRVVLPKASKMFGKQINTCLKVMDMT 159
Query: 78 GLKLSALNQMKVLHTWT 94
GLKLSALNQ+K+L T T
Sbjct: 160 GLKLSALNQIKMLSTIT 176
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.329 0.139 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,510,124
Number of extensions: 114060
Number of successful extensions: 338
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 3
Length of query: 120
Length of database: 17,035,801
Length adjustment: 86
Effective length of query: 34
Effective length of database: 12,545,397
Effective search space: 426543498
Effective search space used: 426543498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 149 (62.0 bits)