FiT-DB / Search/ Help/ Sample detail

Os06g0607200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cellular retinaldehyde-binding/triple function, C-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0181) R2 : 0.848
β1 : -0.903 (0.066) R2dD : 0.0646 R2D : 0.0297
β2 : 2.22 (0.0467) R2dC : 0.759 R2C : 0.721
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.539 (0.0385) R2dN8 : 0.0874 R2N8 : 0.0291
σ : 0.339
deviance : 52.45
__
_____
C
peak time of C : 7.06
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
45.82 0.318 10.9 -0.885 2.35 -0.416 0.683 0.462 -0.626 6.76 86.13 15 -- --
46.38 0.317 10.9 -0.866 2.36 -0.407 0.72 -- -0.62 6.71 84 16 -- --
46.89 0.319 10.9 -0.879 2.36 -0.414 -- 0.477 -0.625 6.72 84 20 -- --
47.68 0.322 10.9 -0.86 2.36 -0.396 -- -- -0.62 6.71 84 16 -- --
177.68 0.621 10.9 -0.689 -- 2.18 -- -1.52 -0.499 -- 60.12 519 -- --
51.35 0.336 10.8 -0.915 2.22 -- 0.649 -- -0.537 7.07 -- -- -- --
52.45 0.339 10.8 -0.903 2.22 -- -- -- -0.539 7.06 -- -- -- --
170.23 0.608 10.9 -0.886 -- 2.09 -- -- -0.381 -- 64.28 524 -- --
66.83 0.381 10.8 -- 2.38 -0.479 -- -- -0.542 6.68 84.55 26 -- --
312.74 0.826 10.9 -0.859 -- -- -- -- -0.498 -- -- -- -- --
73.94 0.402 10.8 -- 2.21 -- -- -- -0.438 7.09 -- -- -- --
190.69 0.643 10.9 -- -- 2.14 -- -- -0.302 -- 62.48 533 -- --
332.22 0.851 10.9 -- -- -- -- -- -0.403 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.72 humidity 80.0 10 > th dose dependent rect. 24 16
7 43.15 radiation 10.0 10 < th dose dependent rect. 24 17
20 43.55 wind 1.0 270 < th dose dependent rect. 24 1
25 43.62 radiation 1.0 90 < th dose independent rect. 24 16
37 43.85 precipitation 0.1 270 < th dose independent rect. 3 10
38 43.85 precipitation 0.1 270 < th dose dependent rect. 3 10
53 44.08 temperature 20.0 270 > th dose independent rect. 23 3
57 44.10 temperature 20.0 270 > th dose independent rect. 12 15
91 44.41 humidity 80.0 10 > th dose dependent rect. 22 20
98 44.48 radiation 1.0 90 > th dose independent rect. 4 11
109 44.49 temperature 15.0 270 > th dose independent rect. 3 9
114 44.50 humidity 90.0 30 < th dose independent rect. 19 18
119 44.52 atmosphere 995.0 270 > th dose independent rect. 3 10
120 44.52 atmosphere 1015.0 270 < th dose independent rect. 3 10
122 44.52 temperature 10.0 270 > th dose independent rect. 13 14
123 44.52 atmosphere 995.0 270 > th dose independent rect. 12 15
124 44.52 humidity 80.0 10 > th dose dependent rect. 24 8
126 44.54 wind 9.0 270 < th dose independent rect. 13 14
129 44.55 humidity 80.0 270 > th dose dependent rect. 22 5
137 44.57 humidity 80.0 270 > th dose dependent rect. 23 3
139 44.58 humidity 90.0 30 > th dose independent rect. 24 14
145 44.60 wind 9.0 270 < th dose independent rect. 3 10
160 44.63 humidity 80.0 10 > th dose dependent rect. 24 6
194 44.71 radiation 1.0 90 < th dose independent rect. 24 11
197 44.71 atmosphere 995.0 270 > th dose independent rect. 23 18
198 44.72 humidity 90.0 30 > th dose independent rect. 24 7
206 44.72 humidity 90.0 30 < th dose independent rect. 19 20
243 44.80 atmosphere 1015.0 270 < th dose independent rect. 22 19
249 44.83 radiation 1.0 90 < th dose dependent rect. 17 7
250 44.84 radiation 10.0 1440 > th dose independent rect. 11 1
251 44.84 temperature 20.0 10 > th dose independent rect. 24 5
255 44.84 radiation 1.0 90 < th dose dependent sin 4 NA
267 44.86 radiation 1.0 90 < th dose independent sin 4 NA
294 44.89 radiation 1.0 1440 < th dose dependent rect. 20 5
302 44.91 radiation 1.0 1440 > th dose independent rect. 9 4
316 44.93 temperature 20.0 10 > th dose independent rect. 13 16
320 44.93 radiation 1.0 90 < th dose dependent rect. 24 8
327 44.95 humidity 50.0 270 > th dose independent rect. 17 5
331 44.96 temperature 30.0 90 < th dose independent rect. 18 6
333 44.97 humidity 70.0 10 > th dose independent rect. 19 5
348 45.00 radiation 1.0 90 < th dose independent rect. 17 7
349 45.00 temperature 30.0 270 < th dose independent rect. 3 9
357 45.01 wind 7.0 270 < th dose independent rect. 17 5
358 45.01 precipitation 0.1 270 < th dose independent rect. 17 5
364 45.01 precipitation 0.1 270 < th dose dependent rect. 17 5
366 45.01 radiation 30.0 270 < th dose dependent rect. 16 7
381 45.03 wind 9.0 270 < th dose independent rect. 22 19
391 45.04 humidity 80.0 10 > th dose dependent sin 6 NA
399 45.05 radiation 30.0 270 < th dose dependent rect. 17 5
411 45.06 radiation 1.0 270 < th dose dependent rect. 22 17
422 45.08 temperature 10.0 270 > th dose independent rect. 17 5
423 45.08 radiation 20.0 270 < th dose independent rect. 17 5
427 45.08 temperature 10.0 270 > th dose independent rect. 22 19
450 45.10 temperature 10.0 1440 > th dose independent rect. 20 5
453 45.10 temperature 30.0 1440 < th dose independent rect. 20 5
457 45.10 humidity 50.0 1440 > th dose independent rect. 20 5
463 45.10 atmosphere 995.0 1440 > th dose independent rect. 20 5
464 45.10 radiation 1.0 1440 < th dose independent rect. 20 5
484 45.10 radiation 20.0 270 < th dose independent rect. 16 7
485 45.10 temperature 10.0 1440 > th dose independent rect. 1 19
491 45.11 radiation 1.0 90 > th dose independent sin 4 NA
513 45.14 humidity 90.0 30 > th dose independent sin 7 NA
556 45.20 atmosphere 1000.0 10 > th dose independent rect. 24 6
563 45.21 wind 7.0 90 < th dose independent rect. 19 5
572 45.23 precipitation 0.1 270 < th dose independent rect. 12 15
578 45.23 precipitation 0.1 270 < th dose dependent rect. 12 15
585 45.25 humidity 90.0 30 < th dose independent sin 7 NA
605 45.26 wind 1.0 270 < th dose independent rect. 23 3
612 45.26 radiation 1.0 270 < th dose independent rect. 22 17
622 45.27 atmosphere 995.0 90 > th dose independent rect. 18 6
689 45.32 wind 9.0 270 < th dose dependent rect. 17 5
708 45.35 wind 1.0 270 > th dose independent rect. 17 5
728 45.37 radiation 10.0 1440 < th dose dependent rect. 13 1
731 45.38 wind 1.0 270 < th dose independent rect. 24 1
732 45.38 wind 7.0 270 < th dose independent rect. 19 2
757 45.39 atmosphere 1000.0 270 > th dose independent rect. 24 2
784 45.42 radiation 40.0 43200 < th dose dependent rect. 20 5
789 45.43 radiation 1.0 1440 < th dose independent rect. 9 3
792 45.43 atmosphere 995.0 270 > th dose independent rect. 21 22
794 45.43 radiation 1.0 1440 < th dose dependent rect. 9 3
798 45.44 atmosphere 1000.0 270 > th dose independent rect. 22 6
831 45.46 humidity 50.0 270 > th dose independent rect. 3 9
879 45.50 radiation 10.0 1440 < th dose dependent rect. 9 6
895 45.52 temperature 30.0 90 < th dose independent rect. 5 8
901 45.53 precipitation 0.1 270 > th dose independent rect. 2 2
911 45.54 wind 1.0 30 > th dose independent rect. 19 5
913 45.54 precipitation 0.1 270 > th dose dependent rect. 2 2
914 45.55 temperature 10.0 270 > th dose independent rect. 19 2
915 45.55 temperature 30.0 270 < th dose independent rect. 19 2
916 45.55 humidity 50.0 270 > th dose independent rect. 19 2
917 45.55 atmosphere 995.0 270 > th dose independent rect. 19 2
918 45.55 radiation 1.0 270 < th dose independent rect. 19 2
927 45.55 temperature 10.0 270 > th dose independent rect. 21 22
930 45.55 radiation 1.0 270 < th dose dependent rect. 19 2
956 45.56 humidity 90.0 30 < th dose independent rect. 19 14
960 45.56 radiation 40.0 90 < th dose independent rect. 13 16
977 45.57 humidity 80.0 270 > th dose independent rect. 23 4
980 45.57 temperature 30.0 90 < th dose independent rect. 19 18