BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0607200 Os06g0607200|J065186F21
         (120 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G47730.1  | chr5:19334592-19336618 REVERSE LENGTH=342          127   1e-30
AT1G55840.1  | chr1:20873891-20876018 FORWARD LENGTH=326          125   4e-30

>AT5G47730.1 | chr5:19334592-19336618 REVERSE LENGTH=342
          Length = 341

 Score =  127 bits (319), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 69/73 (94%)

Query: 18  QGIPVFAIGVGQSTYDKASVHYYVQSHIQINEYRDRIVLPMASKKFGRPISTCIKVLDMT 77
           +G+PVFAIGVG ST+DKASVHYYVQSHIQINEYRDR++LP  SKK GRPI+TC+KVLDMT
Sbjct: 100 EGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVLLPSISKKNGRPITTCVKVLDMT 159

Query: 78  GLKLSALNQMKVL 90
           GLKLSAL+Q+K++
Sbjct: 160 GLKLSALSQIKLV 172



>AT1G55840.1 | chr1:20873891-20876018 FORWARD LENGTH=326
          Length = 325

 Score =  125 bits (315), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 58/77 (75%), Positives = 69/77 (89%)

Query: 18  QGIPVFAIGVGQSTYDKASVHYYVQSHIQINEYRDRIVLPMASKKFGRPISTCIKVLDMT 77
           +G+PV AIGVG STYDKASVHYYVQSHIQ+NEYRDR+VLP ASKK GRPI TC+K+LDM+
Sbjct: 100 EGLPVIAIGVGLSTYDKASVHYYVQSHIQMNEYRDRVVLPSASKKQGRPICTCLKILDMS 159

Query: 78  GLKLSALNQMKVLHTWT 94
           GLKLSAL+Q+K++   T
Sbjct: 160 GLKLSALSQIKLMTAIT 176



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.329    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,365,109
Number of extensions: 80234
Number of successful extensions: 203
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 2
Length of query: 120
Length of database: 11,106,569
Length adjustment: 86
Effective length of query: 34
Effective length of database: 8,748,793
Effective search space: 297458962
Effective search space used: 297458962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 105 (45.1 bits)