Os09g0258000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cellular retinaldehyde-binding/triple function, N-terminal domain containing protein.
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Os09g0258000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cellular retinaldehyde-binding/triple function, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.78 | 0.331 | 12.6 | -0.52 | 2.21 | 0.263 | 0.369 | 1.36 | -0.302 | 7.16 | 24.79 | 725 | -- | -- |
| 52.74 | 0.338 | 12.6 | -0.112 | 2.18 | 0.343 | 0.844 | -- | -0.165 | 7.2 | 24.74 | 661 | -- | -- |
| 49.96 | 0.329 | 12.6 | -0.563 | 2.2 | 0.249 | -- | 1.52 | -0.32 | 7.19 | 24.75 | 654 | -- | -- |
| 54.61 | 0.344 | 12.6 | -0.0974 | 2.18 | 0.344 | -- | -- | -0.168 | 7.13 | 24.7 | 697 | -- | -- |
| 203.43 | 0.664 | 12.6 | -0.0668 | -- | 1.57 | -- | 1.44 | -0.0724 | -- | 27.6 | 459 | -- | -- |
| 56.91 | 0.354 | 12.6 | -0.227 | 2.31 | -- | 0.897 | -- | -0.299 | 7.28 | -- | -- | -- | -- |
| 59.06 | 0.36 | 12.6 | -0.209 | 2.31 | -- | -- | -- | -0.301 | 7.26 | -- | -- | -- | -- |
| 193.68 | 0.648 | 12.6 | 0.191 | -- | 1.91 | -- | -- | -0.0276 | -- | 28.2 | 547 | -- | -- |
| 54.83 | 0.345 | 12.6 | -- | 2.16 | 0.369 | -- | -- | -0.147 | 7.13 | 24.74 | 698 | -- | -- |
| 341.43 | 0.863 | 12.7 | -0.168 | -- | -- | -- | -- | -0.261 | -- | -- | -- | -- | -- |
| 60.21 | 0.363 | 12.6 | -- | 2.31 | -- | -- | -- | -0.278 | 7.26 | -- | -- | -- | -- |
| 194.62 | 0.65 | 12.6 | -- | -- | 1.89 | -- | -- | -0.0509 | -- | 28.21 | 547 | -- | -- |
| 342.17 | 0.863 | 12.7 | -- | -- | -- | -- | -- | -0.243 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.40 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 2 | 45.42 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 3 | 45.47 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 14 | 18 |
| 5 | 45.51 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 6 | 45.59 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 13 |
| 11 | 45.77 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 16 | 45.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 22 |
| 17 | 45.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 22 |
| 22 | 46.00 | temperature | 15.0 | 90 | > th | dose independent | rect. | 20 | 19 |
| 29 | 46.10 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 30 | 46.11 | temperature | 15.0 | 270 | > th | dose independent | rect. | 9 | 14 |
| 34 | 46.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 35 | 46.19 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 15 | 5 |
| 40 | 46.29 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 45 | 46.41 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 4 |
| 46 | 46.44 | wind | 7.0 | 90 | < th | dose independent | rect. | 15 | 5 |
| 49 | 46.46 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 58 | 46.58 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 14 | 6 |
| 65 | 46.62 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 19 |
| 67 | 46.62 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 19 |
| 68 | 46.63 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 20 | 19 |
| 69 | 46.63 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 20 | 19 |
| 72 | 46.66 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 19 |
| 73 | 46.68 | wind | 1.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 77 | 46.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 2 |
| 78 | 46.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 2 |
| 79 | 46.71 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 82 | 46.71 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 94 | 46.77 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 16 | 4 |
| 97 | 46.82 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 144 | 47.08 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 15 | 2 |
| 150 | 47.11 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 10 |
| 151 | 47.11 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 14 |
| 157 | 47.14 | temperature | 20.0 | 90 | > th | dose independent | rect. | 15 | 19 |
| 160 | 47.15 | wind | 1.0 | 90 | > th | dose independent | rect. | 15 | 5 |
| 162 | 47.15 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 163 | 47.16 | temperature | 10.0 | 90 | > th | dose independent | rect. | 15 | 5 |
| 165 | 47.16 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 15 | 5 |
| 168 | 47.16 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 20 | 19 |
| 182 | 47.20 | radiation | 40.0 | 90 | < th | dose independent | rect. | 15 | 5 |
| 186 | 47.22 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 13 |
| 187 | 47.23 | temperature | 10.0 | 270 | > th | dose independent | rect. | 23 | 10 |
| 188 | 47.23 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 10 |
| 189 | 47.23 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 10 |
| 193 | 47.24 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 10 |
| 205 | 47.27 | wind | 9.0 | 90 | < th | dose dependent | rect. | 15 | 5 |
| 213 | 47.30 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 15 | 5 |
| 215 | 47.30 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 15 | 5 |
| 217 | 47.31 | wind | 9.0 | 90 | < th | dose independent | rect. | 20 | 19 |
| 218 | 47.31 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 18 |
| 232 | 47.33 | wind | 1.0 | 10 | > th | dose independent | rect. | 15 | 5 |
| 233 | 47.33 | wind | 7.0 | 270 | < th | dose independent | rect. | 13 | 6 |
| 239 | 47.35 | temperature | 10.0 | 10 | > th | dose independent | rect. | 15 | 5 |
| 241 | 47.35 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 15 | 5 |
| 243 | 47.35 | radiation | 40.0 | 10 | < th | dose independent | rect. | 15 | 5 |
| 247 | 47.35 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 20 | 19 |
| 257 | 47.39 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 15 | 5 |
| 259 | 47.39 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 19 |
| 260 | 47.39 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 15 | 5 |
| 261 | 47.40 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 15 | 5 |
| 264 | 47.41 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 22 |
| 280 | 47.46 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 288 | 47.49 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 291 | 47.49 | radiation | 20.0 | 270 | > th | dose independent | rect. | 15 | 17 |
| 292 | 47.49 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 308 | 47.53 | radiation | 40.0 | 270 | < th | dose independent | rect. | 23 | 10 |
| 315 | 47.56 | radiation | 1.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 333 | 47.59 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 14 |
| 350 | 47.63 | radiation | 10.0 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 352 | 47.64 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 10 | 10 |
| 362 | 47.66 | temperature | 15.0 | 270 | > th | dose dependent | sin | 17 | NA |
| 374 | 47.70 | humidity | 50.0 | 10 | > th | dose independent | rect. | 15 | 5 |
| 380 | 47.71 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 395 | 47.73 | temperature | 30.0 | 270 | < th | dose independent | rect. | 23 | 10 |
| 400 | 47.74 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 410 | 47.75 | temperature | 10.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 412 | 47.75 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 6 |
| 440 | 47.78 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 15 | 5 |
| 442 | 47.78 | humidity | 90.0 | 30 | < th | dose independent | rect. | 20 | 19 |
| 444 | 47.78 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 452 | 47.80 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 6 |
| 454 | 47.80 | temperature | 20.0 | 10 | > th | dose independent | rect. | 16 | 18 |
| 456 | 47.80 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 6 |
| 457 | 47.81 | humidity | 90.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 482 | 47.87 | radiation | 20.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 521 | 47.91 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 15 | 5 |
| 531 | 47.94 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 6 |
| 546 | 47.97 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 551 | 47.98 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 16 | 4 |
| 558 | 47.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 14 |
| 560 | 47.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 14 |
| 561 | 48.00 | temperature | 15.0 | 90 | > th | dose independent | rect. | 20 | 5 |
| 577 | 48.03 | radiation | 20.0 | 270 | < th | dose dependent | sin | 13 | NA |
| 579 | 48.04 | wind | 5.0 | 90 | < th | dose independent | rect. | 17 | 2 |
| 654 | 48.14 | humidity | 90.0 | 270 | < th | dose independent | rect. | 19 | 5 |
| 655 | 48.14 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 23 |
| 669 | 48.15 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 14 |
| 671 | 48.15 | temperature | 30.0 | 90 | < th | dose independent | rect. | 20 | 19 |
| 688 | 48.18 | temperature | 15.0 | 270 | > th | dose independent | rect. | 20 | 1 |
| 706 | 48.21 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 15 |
| 737 | 48.27 | temperature | 20.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 769 | 48.30 | wind | 9.0 | 270 | < th | dose dependent | rect. | 15 | 2 |
| 771 | 48.31 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 778 | 48.31 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 785 | 48.33 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 795 | 48.33 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 6 |
| 819 | 48.37 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 19 |
| 828 | 48.39 | temperature | 30.0 | 270 | < th | dose dependent | sin | 20 | NA |
| 854 | 48.43 | temperature | 25.0 | 720 | < th | dose dependent | sin | 23 | NA |
| 857 | 48.44 | humidity | 90.0 | 270 | < th | dose independent | rect. | 20 | 2 |
| 907 | 48.50 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 20 | 6 |
| 979 | 48.60 | radiation | 1.0 | 270 | < th | dose independent | sin | 14 | NA |
| 981 | 48.60 | wind | 1.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 984 | 48.61 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 10 |
| 989 | 48.61 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 10 |