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Os02g0200000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cellular retinaldehyde binding/alpha-tocopherol transport family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.4 (0.0229) R2 : 0.379
β1 : -1.04 (0.0837) R2dD : 0.217 R2D : 0.202
β2 : 0.652 (0.0594) R2dC : 0.165 R2C : 0.168
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.104 (0.0488) R2dN8 : 0.00828 R2N8 : -0.00735
σ : 0.43
deviance : 84.16
__
_____
C
peak time of C : 18.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
75.07 0.407 9.47 -1.05 0.651 -0.0624 0.842 -2.55 -0.158 18.8 9.978 4432 -- --
80.51 0.421 9.4 -1.05 0.645 0.226 0.826 -- -0.123 17.5 9.978 4432 -- --
75.61 0.405 9.44 -0.938 0.671 -0.0144 -- -2.69 -0.115 18.7 18.76 3564 -- --
80.77 0.421 9.4 -1.02 0.664 0.288 -- -- -0.111 17.4 18.76 3564 -- --
97.88 0.461 9.41 -0.854 -- -0.2 -- -2.25 -0.0796 -- 17.77 3608 -- --
82.52 0.426 9.4 -1.02 0.649 -- 0.802 -- -0.106 18.8 -- -- -- --
84.16 0.43 9.4 -1.04 0.652 -- -- -- -0.104 18.8 -- -- -- --
102.57 0.474 9.39 -1.04 -- 0.212 -- -- -0.126 -- 17.77 3608 -- --
92.67 0.448 9.34 -- 0.656 -0.66 -- -- 0.171 18.8 76.35 47520 -- --
106.37 0.482 9.39 -1.05 -- -- -- -- -0.116 -- -- -- -- --
112.49 0.496 9.38 -- 0.664 -- -- -- 0.0116 18.7 -- -- -- --
113.19 0.496 9.32 -- -- -0.786 -- -- 0.189 -- 69.83 47520 -- --
135.51 0.543 9.36 -- -- -- -- -- 0.000131 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.18 temperature 20.0 90 > th dose independent rect. 12 19
5 65.16 temperature 15.0 30 > th dose dependent rect. 12 19
9 66.01 temperature 15.0 270 > th dose independent rect. 21 9
16 66.40 atmosphere 1010.0 270 < th dose independent rect. 21 9
18 66.42 temperature 20.0 270 > th dose independent rect. 6 4
27 67.21 temperature 15.0 10 > th dose dependent rect. 7 5
35 67.52 radiation 1.0 90 > th dose independent rect. 12 18
47 67.79 wind 9.0 270 < th dose independent rect. 6 15
50 67.84 radiation 1.0 270 > th dose independent rect. 11 6
56 68.01 temperature 20.0 90 > th dose independent rect. 23 8
61 68.07 radiation 1.0 30 < th dose dependent sin 15 NA
65 68.09 radiation 1.0 270 > th dose independent rect. 10 20
73 68.20 wind 7.0 270 < th dose independent rect. 17 17
75 68.22 humidity 50.0 270 > th dose dependent rect. 21 9
79 68.28 temperature 30.0 270 < th dose independent rect. 21 9
80 68.28 humidity 50.0 270 > th dose independent rect. 21 9
83 68.28 atmosphere 995.0 270 > th dose independent rect. 21 9
84 68.28 radiation 20.0 270 < th dose independent rect. 21 9
87 68.28 temperature 10.0 270 > th dose independent rect. 6 15
109 68.41 radiation 40.0 270 < th dose dependent rect. 21 9
110 68.42 wind 9.0 270 < th dose independent rect. 21 9
112 68.42 temperature 10.0 270 > th dose dependent rect. 21 9
126 68.55 radiation 1.0 10 > th dose independent rect. 12 19
129 68.57 temperature 15.0 90 > th dose dependent rect. 12 14
140 68.63 atmosphere 1010.0 90 < th dose independent rect. 12 19
141 68.64 temperature 20.0 10 > th dose independent rect. 7 5
142 68.65 precipitation 0.1 270 < th dose independent rect. 21 9
143 68.65 humidity 50.0 270 > th dose independent rect. 16 19
144 68.65 precipitation 0.1 270 < th dose dependent rect. 21 9
154 68.72 humidity 90.0 270 < th dose independent rect. 11 6
186 68.95 humidity 50.0 270 > th dose independent rect. 17 17
203 69.06 humidity 90.0 10 < th dose independent rect. 7 5
214 69.11 atmosphere 995.0 270 > th dose independent rect. 17 17
217 69.13 precipitation 0.1 270 < th dose independent rect. 6 15
220 69.13 precipitation 0.1 270 < th dose dependent rect. 6 15
221 69.14 precipitation 0.1 270 < th dose independent rect. 10 7
222 69.14 precipitation 0.1 270 < th dose dependent rect. 10 7
228 69.18 wind 7.0 270 < th dose independent rect. 6 5
229 69.19 radiation 1.0 30 > th dose independent sin 15 NA
237 69.25 wind 5.0 270 < th dose independent rect. 7 2
240 69.26 radiation 1.0 30 < th dose independent sin 15 NA
244 69.28 temperature 10.0 270 > th dose independent rect. 10 7
245 69.28 atmosphere 1015.0 270 < th dose independent rect. 10 7
246 69.28 temperature 10.0 270 > th dose independent rect. 17 17
256 69.34 temperature 20.0 270 > th dose independent rect. 11 6
262 69.37 radiation 1.0 270 > th dose independent rect. 4 7
281 69.40 wind 1.0 270 > th dose dependent rect. 12 3
283 69.41 radiation 1.0 270 > th dose independent rect. 6 4
284 69.41 precipitation 0.1 270 < th dose independent rect. 11 19
285 69.41 precipitation 0.1 270 < th dose dependent rect. 11 19
297 69.46 precipitation 0.1 270 < th dose independent rect. 6 5
300 69.46 precipitation 0.1 270 < th dose dependent rect. 6 5
301 69.47 humidity 50.0 270 > th dose independent rect. 6 5
312 69.51 radiation 30.0 270 < th dose independent rect. 15 10
313 69.51 wind 1.0 90 > th dose independent rect. 18 18
322 69.53 temperature 20.0 10 > th dose independent rect. 23 8
325 69.54 atmosphere 995.0 270 > th dose independent rect. 6 5
326 69.54 atmosphere 1015.0 270 < th dose independent rect. 6 5
328 69.54 wind 9.0 270 < th dose dependent rect. 7 2
368 69.61 wind 9.0 270 < th dose dependent rect. 6 5
374 69.62 wind 1.0 270 > th dose dependent rect. 11 5
376 69.63 atmosphere 1015.0 270 < th dose independent rect. 6 15
385 69.71 wind 3.0 270 > th dose independent rect. 12 3
386 69.71 wind 9.0 270 < th dose independent rect. 10 7
391 69.72 precipitation 0.1 270 < th dose independent rect. 17 17
394 69.72 precipitation 0.1 270 < th dose dependent rect. 17 17
396 69.73 wind 9.0 270 < th dose independent rect. 11 5
416 69.82 wind 9.0 270 < th dose dependent rect. 6 15
418 69.84 wind 3.0 270 > th dose independent rect. 11 5
428 69.87 atmosphere 995.0 270 > th dose independent rect. 11 5
435 69.89 precipitation 0.1 270 < th dose independent rect. 7 2
440 69.89 precipitation 0.1 270 < th dose dependent rect. 7 2
447 69.91 humidity 50.0 270 > th dose independent rect. 7 2
448 69.91 atmosphere 995.0 270 > th dose independent rect. 7 2
449 69.91 atmosphere 1015.0 270 < th dose independent rect. 7 2
460 69.93 atmosphere 1015.0 10 < th dose independent rect. 12 19
478 69.96 temperature 20.0 270 > th dose independent rect. 12 3
490 69.99 humidity 90.0 270 < th dose independent rect. 12 3
493 69.99 atmosphere 1015.0 270 < th dose dependent rect. 21 9
499 70.02 wind 9.0 270 < th dose independent rect. 11 19
504 70.04 atmosphere 995.0 270 > th dose independent rect. 6 15
510 70.08 atmosphere 1015.0 90 < th dose dependent rect. 23 8
523 70.12 radiation 40.0 270 < th dose dependent rect. 15 10
539 70.19 humidity 50.0 270 > th dose independent rect. 12 3
556 70.20 atmosphere 1015.0 30 < th dose dependent rect. 12 19
567 70.24 temperature 10.0 270 > th dose dependent rect. 11 5
578 70.28 temperature 10.0 270 > th dose dependent rect. 12 3
583 70.30 wind 9.0 270 < th dose independent rect. 15 10
586 70.31 atmosphere 995.0 270 > th dose dependent rect. 12 3
605 70.39 atmosphere 995.0 270 > th dose dependent rect. 11 5
607 70.40 precipitation 0.1 270 < th dose independent rect. 12 3
611 70.40 precipitation 0.1 270 < th dose dependent rect. 12 3
625 70.43 atmosphere 1010.0 270 < th dose independent rect. 12 3
626 70.43 radiation 1.0 270 > th dose independent rect. 12 3
659 70.48 temperature 10.0 270 > th dose independent rect. 12 3
663 70.48 wind 7.0 10 < th dose independent rect. 7 5
666 70.48 temperature 10.0 270 > th dose independent rect. 15 21
673 70.50 temperature 30.0 270 < th dose independent rect. 7 2
697 70.52 wind 1.0 270 > th dose independent rect. 7 3
699 70.52 radiation 1.0 10 > th dose independent rect. 7 5
701 70.52 temperature 10.0 270 > th dose independent rect. 15 10
702 70.52 temperature 10.0 270 > th dose independent rect. 1 14
703 70.52 atmosphere 1015.0 270 < th dose independent rect. 1 14
743 70.60 atmosphere 995.0 270 > th dose independent rect. 12 3
756 70.62 wind 9.0 270 < th dose independent rect. 12 3
757 70.62 temperature 15.0 1440 > th dose independent rect. 13 6
762 70.63 precipitation 0.1 10 < th dose independent rect. 7 5
765 70.63 precipitation 0.1 10 < th dose dependent rect. 7 5
772 70.66 radiation 40.0 30 < th dose independent rect. 12 19
773 70.67 humidity 50.0 270 > th dose independent rect. 11 5
782 70.69 wind 1.0 90 > th dose independent rect. 7 5
783 70.69 temperature 10.0 10 > th dose independent rect. 7 5
785 70.69 atmosphere 995.0 10 > th dose independent rect. 7 5
786 70.69 atmosphere 1015.0 10 < th dose independent rect. 7 5
818 70.74 radiation 1.0 270 < th dose independent rect. 21 16
820 70.75 humidity 90.0 10 < th dose independent rect. 3 9
833 70.76 temperature 10.0 1440 > th dose independent rect. 19 18
836 70.76 atmosphere 995.0 1440 > th dose independent rect. 19 18
839 70.77 radiation 40.0 270 < th dose independent rect. 7 2
844 70.77 radiation 1.0 90 > th dose dependent rect. 6 6
854 70.79 radiation 1.0 270 < th dose independent rect. 21 14
880 70.82 atmosphere 995.0 270 > th dose independent rect. 1 14
886 70.83 humidity 50.0 270 > th dose dependent rect. 7 2
934 70.88 radiation 1.0 270 < th dose independent sin 8 NA
935 70.88 temperature 10.0 1440 > th dose independent rect. 8 5
938 70.88 atmosphere 995.0 1440 > th dose independent rect. 8 5
940 70.88 temperature 10.0 1440 > th dose independent rect. 13 19
965 70.90 wind 9.0 10 < th dose independent rect. 12 19