BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0575100 Os06g0575100|J100034A01
(202 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0575100 Conserved hypothetical protein 204 3e-53
Os06g0575300 69 2e-12
Os04g0576700 Conserved hypothetical protein 65 4e-11
Os10g0550200 Conserved hypothetical protein 65 4e-11
>Os06g0575100 Conserved hypothetical protein
Length = 202
Score = 204 bits (519), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/151 (68%), Positives = 103/151 (68%)
Query: 52 NIRPSNPTTQSXXXXXXXXXXXXWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 111
NIRPSNPTTQS W
Sbjct: 52 NIRPSNPTTQSGCGRARCTRRRCWSTTTPPSTSAVAASSTSSSGPSSAAPSSPARPPTAT 111
Query: 112 YVNFIARAIGGGSSCDQRLFFAEVRKDKKRYIPTCLWSLDDEADRVGGAGADPQVDLPEI 171
YVNFIARAIGGGSSCDQRLFFAEVRKDKKRYIPTCLWSLDDEADRVGGAGADPQVDLPEI
Sbjct: 112 YVNFIARAIGGGSSCDQRLFFAEVRKDKKRYIPTCLWSLDDEADRVGGAGADPQVDLPEI 171
Query: 172 TSPSRRNYWFSCDDEMKHPKDGTSYHAGHFL 202
TSPSRRNYWFSCDDEMKHPKDGTSYHAGHFL
Sbjct: 172 TSPSRRNYWFSCDDEMKHPKDGTSYHAGHFL 202
>Os06g0575300
Length = 157
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 44/60 (73%), Gaps = 5/60 (8%)
Query: 112 YVNFIARAI---GGGSSCDQRLFFAEVRKDKKRYIPTCLWSLDDEADRVGG--AGADPQV 166
+VNFIARA GG ++RLFFAEVR D + +IPTCL SLDDEADRVGG AG DP V
Sbjct: 58 HVNFIARAAASGGGTLRQEERLFFAEVRNDGEGWIPTCLRSLDDEADRVGGLAAGDDPPV 117
>Os04g0576700 Conserved hypothetical protein
Length = 418
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 112 YVNFIARAIGGGSSCDQRLFFAEVRKDKKRYIPTCLWSLDDEADRVGGAGADPQVDLPE- 170
+VNF+A+ G FFAEVR D Y+P C+ SL E G D +VD P
Sbjct: 323 HVNFVAK--GDLPDSVDEFFFAEVRWDIDSYVPVCMVSL--EGKEKSGGYRDIEVDYPRG 378
Query: 171 --ITSPSRRNYWFSCDDEMKHPKDGTSYHAGHF 201
+ P +N+ ++C D +KHP+DGT Y +GH
Sbjct: 379 GFVGVPVDKNHCYACGDGLKHPEDGTLYESGHI 411
>Os10g0550200 Conserved hypothetical protein
Length = 141
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 3/89 (3%)
Query: 112 YVNFIARAIGGGSSCDQRLFFAEVRKDKKRYIPTCLWSLDDEADRVGGAGADPQVDLPEI 171
+VNFIA+ G + LFFAEVR + YIPTC+ SL+ + G GA
Sbjct: 48 HVNFIAK---GDCKNSEELFFAEVRWENNGYIPTCMVSLEGKEKIGGYYGARVHYPRGVP 104
Query: 172 TSPSRRNYWFSCDDEMKHPKDGTSYHAGH 200
P + + + C DE+KHP+DGT Y +GH
Sbjct: 105 GLPIDKQHCYFCGDELKHPEDGTLYESGH 133
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,784,425
Number of extensions: 184232
Number of successful extensions: 367
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 4
Length of query: 202
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 106
Effective length of database: 12,023,257
Effective search space: 1274465242
Effective search space used: 1274465242
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)