Os04g0576700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0576700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.54 | 0.208 | 11.3 | 1.05 | 0.366 | -0.527 | 0.285 | -0.342 | 0.0648 | 14.3 | 0.1409 | 5101 | -- | -- |
| 19.59 | 0.206 | 11.3 | 1.03 | 0.373 | -0.516 | 0.284 | -- | 0.0648 | 14.3 | 0.3807 | 5456 | -- | -- |
| 19.79 | 0.207 | 11.3 | 1.05 | 0.371 | -0.52 | -- | -0.312 | 0.0623 | 14.2 | 0.001684 | 5459 | -- | -- |
| 19.87 | 0.208 | 11.3 | 1.03 | 0.369 | -0.535 | -- | -- | 0.0583 | 14.2 | 0.359 | 5456 | -- | -- |
| 27.8 | 0.246 | 11.3 | 1.06 | -- | -0.525 | -- | -0.456 | 0.0568 | -- | 0.2212 | 5100 | -- | -- |
| 23.5 | 0.227 | 11.3 | 0.94 | 0.366 | -- | 0.353 | -- | 0.115 | 14.4 | -- | -- | -- | -- |
| 23.95 | 0.229 | 11.3 | 0.95 | 0.366 | -- | -- | -- | 0.117 | 14.3 | -- | -- | -- | -- |
| 27.98 | 0.246 | 11.3 | 1.03 | -- | -0.551 | -- | -- | 0.0544 | -- | 0.288 | 5100 | -- | -- |
| 43.41 | 0.307 | 11.3 | -- | 0.353 | -0.383 | -- | -- | 0.00155 | 14.3 | 0.5 | 15653 | -- | -- |
| 31.9 | 0.264 | 11.3 | 0.935 | -- | -- | -- | -- | 0.108 | -- | -- | -- | -- | -- |
| 47.73 | 0.323 | 11.3 | -- | 0.348 | -- | -- | -- | 0.0115 | 14.2 | -- | -- | -- | -- |
| 50.11 | 0.33 | 11.3 | -- | -- | -0.405 | -- | -- | -0.0941 | -- | 0.1716 | 15310 | -- | -- |
| 54.94 | 0.346 | 11.3 | -- | -- | -- | -- | -- | 0.00474 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.50 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 14 |
| 2 | 18.50 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 16 |
| 4 | 18.52 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 15 | 18.62 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 24 | 18.67 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 12 |
| 41 | 18.71 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 42 | 18.71 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 48 | 18.73 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 54 | 18.74 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 8 |
| 68 | 18.77 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 14 |
| 78 | 18.79 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 5 |
| 79 | 18.79 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 7 |
| 81 | 18.80 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 95 | 18.82 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 111 | 18.84 | humidity | 90.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 112 | 18.84 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 121 | 18.85 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 138 | 18.88 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 153 | 18.90 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 164 | 18.91 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 169 | 18.92 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 11 |
| 189 | 18.95 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 213 | 18.97 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 214 | 18.97 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 231 | 18.99 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 232 | 18.99 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 8 | 3 |
| 237 | 19.00 | humidity | 90.0 | 14400 | < th | dose independent | sin | 23 | NA |
| 250 | 19.01 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 265 | 19.02 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 24 | 17 |
| 282 | 19.03 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 296 | 19.05 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 298 | 19.05 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 4 |
| 302 | 19.05 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 24 | 17 |
| 308 | 19.05 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 24 | 17 |
| 336 | 19.08 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 3 | NA |
| 337 | 19.08 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 3 | NA |
| 338 | 19.08 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 9 | 5 |
| 344 | 19.08 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 3 | NA |
| 518 | 19.20 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 552 | 19.21 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 24 | 17 |
| 601 | 19.25 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 682 | 19.30 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 745 | 19.33 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 771 | 19.34 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 4 | NA |
| 790 | 19.35 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 4 | 7 |
| 798 | 19.36 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 805 | 19.36 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 819 | 19.37 | temperature | 25.0 | 720 | < th | dose independent | rect. | 7 | 4 |
| 861 | 19.39 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 891 | 19.40 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 894 | 19.40 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 899 | 19.40 | temperature | 25.0 | 720 | < th | dose independent | rect. | 6 | 6 |
| 930 | 19.41 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 941 | 19.41 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 963 | 19.42 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 12 | 23 |
| 967 | 19.43 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |