Os10g0550200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0550200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.66 | 0.292 | 9.39 | -0.419 | 1.05 | 0.391 | 0.501 | -0.534 | 0.319 | 0.892 | 20 | 1442 | -- | -- |
| 39.11 | 0.291 | 9.39 | -0.413 | 1.03 | 0.399 | 0.513 | -- | 0.31 | 0.85 | 26.94 | 1557 | -- | -- |
| 39.73 | 0.294 | 9.39 | -0.419 | 1.05 | 0.391 | -- | -0.534 | 0.319 | 0.892 | 20 | 1442 | -- | -- |
| 40.18 | 0.295 | 9.4 | -0.434 | 1.02 | 0.393 | -- | -- | 0.306 | 0.824 | 29.26 | 1541 | -- | -- |
| 44.64 | 0.311 | 9.37 | -0.468 | -- | 0.788 | -- | 0.275 | 0.287 | -- | 1.745 | 125 | -- | -- |
| 44.86 | 0.314 | 9.42 | -0.486 | 1.03 | -- | 0.451 | -- | 0.22 | 0.882 | -- | -- | -- | -- |
| 45.72 | 0.317 | 9.42 | -0.502 | 1.03 | -- | -- | -- | 0.218 | 0.875 | -- | -- | -- | -- |
| 44.8 | 0.312 | 9.39 | -0.466 | -- | 0.836 | -- | -- | 0.263 | -- | 1.742 | 142 | -- | -- |
| 44.65 | 0.311 | 9.38 | -- | 1.05 | 0.456 | -- | -- | 0.383 | 0.813 | 20.34 | 1497 | -- | -- |
| 112.4 | 0.495 | 9.4 | -0.464 | -- | -- | -- | -- | 0.237 | -- | -- | -- | -- | -- |
| 52.37 | 0.339 | 9.4 | -- | 1.03 | -- | -- | -- | 0.274 | 0.853 | -- | -- | -- | -- |
| 50.52 | 0.331 | 9.38 | -- | -- | 0.828 | -- | -- | 0.308 | -- | 1.74 | 147 | -- | -- |
| 118.08 | 0.507 | 9.39 | -- | -- | -- | -- | -- | 0.289 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.09 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 2 | 38.16 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 4 | 38.20 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 6 | 38.26 | radiation | 10 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 7 | 38.27 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 9 | 38.29 | radiation | 30 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 21 | 38.36 | radiation | 30 | 1440 | < th | dose independent | rect. | 4 | 9 |
| 27 | 38.37 | radiation | 30 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 28 | 38.37 | radiation | 30 | 1440 | < th | dose independent | rect. | 19 | 18 |
| 41 | 38.42 | radiation | 20 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 47 | 38.49 | radiation | 40 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 61 | 38.50 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 62 | 38.50 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 69 | 38.50 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 71 | 38.50 | radiation | 40 | 1440 | < th | dose dependent | rect. | 8 | 9 |
| 104 | 38.55 | radiation | 20 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 141 | 38.59 | radiation | 20 | 1440 | < th | dose independent | sin | 0 | NA |
| 173 | 38.60 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 215 | 38.63 | radiation | 30 | 1440 | < th | dose independent | sin | 4 | NA |
| 220 | 38.63 | radiation | 40 | 1440 | < th | dose dependent | sin | 0 | NA |
| 238 | 38.64 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 247 | 38.65 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 257 | 38.66 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 330 | 38.66 | radiation | 1 | 1440 | > th | dose dependent | sin | 0 | NA |
| 532 | 38.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 564 | 38.73 | radiation | 10 | 720 | < th | dose dependent | rect. | 6 | 13 |
| 590 | 38.73 | radiation | 40 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 804 | 38.77 | radiation | 1 | 1440 | > th | dose dependent | no | NA | NA |
| 805 | 38.77 | radiation | 40 | 1440 | < th | dose dependent | no | NA | NA |
| 894 | 38.78 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 23 |