BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0554600 Os06g0554600|Os06g0554600
(266 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0554600 Conserved hypothetical protein 424 e-119
Os02g0229800 Conserved hypothetical protein 146 2e-35
Os05g0200700 Conserved hypothetical protein 105 3e-23
Os01g0198500 Conserved hypothetical protein 102 2e-22
>Os06g0554600 Conserved hypothetical protein
Length = 266
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/266 (80%), Positives = 214/266 (80%)
Query: 1 MARRLWHVVRAVLFMLRKGMSKRKLAMDLHLLLHRGKIAGNKALGKIMNXXXXXXXXXXX 60
MARRLWHVVRAVLFMLRKGMSKRKLAMDLHLLLHRGKIAGNKALGKIMN
Sbjct: 1 MARRLWHVVRAVLFMLRKGMSKRKLAMDLHLLLHRGKIAGNKALGKIMNTTTATASHGHG 60
Query: 61 XXXXXXXXXXXXXXXXXPFSCGRALDPALAVYDPRGAGLEVEFSCSNTPSYPSSFHLIPT 120
PFSCGRALDPALAVYDPRGAGLEVEFSCSNTPSYPSSFHLIPT
Sbjct: 61 HAADAASTAAGEAAAAAPFSCGRALDPALAVYDPRGAGLEVEFSCSNTPSYPSSFHLIPT 120
Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXEPGWYNYDAADIARVFEILNSSDQLLGDGGAAVAA 180
K EPGWYNYDAADIARVFEILNSSDQLLGDGGAAVAA
Sbjct: 121 KRRRRNNNGSNGRRRGGGGRGANGGEPGWYNYDAADIARVFEILNSSDQLLGDGGAAVAA 180
Query: 181 TPSPALWRTSFGGRSPAPVRQLRITDSPFPIRDDGGEDAGAGLVDLEAEEFINKFYEQLR 240
TPSPALWRTSFGGRSPAPVRQLRITDSPFPIRDDGGEDAGAGLVDLEAEEFINKFYEQLR
Sbjct: 181 TPSPALWRTSFGGRSPAPVRQLRITDSPFPIRDDGGEDAGAGLVDLEAEEFINKFYEQLR 240
Query: 241 TQQQSLATATPDYYAGYSRPVTGVAY 266
TQQQSLATATPDYYAGYSRPVTGVAY
Sbjct: 241 TQQQSLATATPDYYAGYSRPVTGVAY 266
>Os02g0229800 Conserved hypothetical protein
Length = 295
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 114/273 (41%), Positives = 137/273 (50%), Gaps = 31/273 (11%)
Query: 1 MARRLWHVVRAVLFMLRKGM---SKRKLAMDLHLLLHRGKIAGNKALGKIMNXXXXXXXX 57
+ARRLW VVRAVL+MLR+G+ S RKLAMDLHLLL RGKIAG KALG ++
Sbjct: 16 VARRLWRVVRAVLYMLRRGLQAPSGRKLAMDLHLLLRRGKIAG-KALGHLVTFHHHHHNH 74
Query: 58 XXXXXXXXXXXXXXXXXXXXPFSCGRALDPALAVYDP-RGAGLEVEFSCSNTPSYPSSFH 116
SC R +DPALAVY+P RG EVEFSCSNTPS +
Sbjct: 75 GHGFSASAAAAGSSS------LSC-RGIDPALAVYEPSRGRRREVEFSCSNTPSSTTGGG 127
Query: 117 LIPTKXXXXXXXXXXXXXXXXXXXXXXXXEPGWYN--YDAADIARVFEILNSSDQLLG-- 172
G+Y+ YDAA +ARVFE+LN S+ L
Sbjct: 128 GGGGLLGRRRRNRHHRRDDYGFSNDAGAGGSGYYDHGYDAAYVARVFEMLNDSEHLFNDD 187
Query: 173 --DGGAAVAATPSPALWR--TSFGGRSPAPV----RQLRITDSPFPIRDDGGEDAGAGL- 223
A A + LW S SPAP + R TDSPF + G++AG G
Sbjct: 188 DAAVAVAPATAETTPLWTPARSHHSHSPAPAAPSRHRGRTTDSPFAASN--GDEAGGGAQ 245
Query: 224 --VDLEAEEFINKFYEQLRTQQQSLATATPDYY 254
VD +A+EFI +FYEQLR Q+ ATPDYY
Sbjct: 246 QQVDRKADEFIRRFYEQLRAQRS--VAATPDYY 276
>Os05g0200700 Conserved hypothetical protein
Length = 250
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 116/265 (43%), Gaps = 51/265 (19%)
Query: 1 MARRLWHVVRAVLFMLRKGMSKRKLAMDLHLLLHRGKIAGNKALGKIMNXXXXXXXXXXX 60
MARRLWHVV AV MLR+G+ +++L +DLH+LL RGK+AG KAL ++
Sbjct: 16 MARRLWHVVLAVCHMLRRGLCRKRLMVDLHVLLGRGKLAG-KALRGLLAHHAAAGHGHHL 74
Query: 61 XXXXXXXXXXXXXXXXXPFSCGRALDPALAVYDPRGAGLEVEFSCSNTPSYPSSFHLIPT 120
P EVEFSC+ TPS + L P
Sbjct: 75 AASSSSSAALASFYGRRP--------------------REVEFSCTTTPSSYPHYGLFPF 114
Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXEPGWYNYDAADIARVFEILNSSDQLLGDGGAAVA- 179
K DAA +AR FE++++ + AA
Sbjct: 115 KSRGGGGGRRGGGGGGEY-----------GGLDAAAVARAFEMMSAEVEGTPSSSAAAVQ 163
Query: 180 ---------ATPSPAL-WRTSFGGRSPAPVRQLRITDSPFPI--RDDGGEDAGAGLVDLE 227
ATPSP + W GRSPA VR LR+TDSPFP + GG + D E
Sbjct: 164 GGGGGGWATATPSPMVAW---ILGRSPAGVRPLRVTDSPFPAVPENGGGGGGEQRVDDAE 220
Query: 228 AEEFINKFYEQLRTQQQSLATATPD 252
E+FINKFYEQLR Q + ATPD
Sbjct: 221 FEDFINKFYEQLRMQPSA---ATPD 242
>Os01g0198500 Conserved hypothetical protein
Length = 237
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/260 (35%), Positives = 118/260 (45%), Gaps = 40/260 (15%)
Query: 3 RRLWHVVRAVLFMLRKGMSKRKLAMDLHLLLHRGKIAGNKALGKIMNXXXXXXXXXXXXX 62
+RL HV+RAV MLR+G+ +++L MDLHLLL RGK+AG +AL ++
Sbjct: 7 KRLMHVLRAVYHMLRRGLCRKRLMMDLHLLLGRGKLAG-RALRDVLLAHQPHGGAAAVAV 65
Query: 63 XXXXXXXXXXXXXXXPFSCGRALDPALAVYDPRGAGLEVEFSCSNTPSYPSSFHLIPTKX 122
++PR +VEFSC+ TPSY + P +
Sbjct: 66 MGGGAGVARGGDSSSSPLSASFFH-----HNPR----DVEFSCTTTPSYAPG--VFPFRF 114
Query: 123 XXXXXXXXXXXXXXXXXXXXXXXEPGWYNY---DAADIARVFEILNSSDQLLGDGGAAV- 178
G NY DA+ +ARVFE+LN+ G
Sbjct: 115 RGRGGSRHAGG--------------GASNYGGLDASAVARVFEMLNADAAAAAGAGGETP 160
Query: 179 -----AATPSPALWRTSFGGRSPAPVRQLRITDSPFPIRDDGGEDAGAGLVDLEAEEFIN 233
ATPSP L + GRSPA RQLR+TDSPFP+ E A G VD +A +FI
Sbjct: 161 LSSMPGATPSPLLALSL--GRSPAGTRQLRVTDSPFPVEPP--EGAVDGRVDDKATDFIE 216
Query: 234 KFYEQLRTQQQSLATATPDY 253
F QL QQQ+ A TPDY
Sbjct: 217 WFRRQL-LQQQASAAPTPDY 235
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,319,108
Number of extensions: 346929
Number of successful extensions: 1185
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1179
Number of HSP's successfully gapped: 5
Length of query: 266
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 167
Effective length of database: 11,866,615
Effective search space: 1981724705
Effective search space used: 1981724705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)