Os06g0554600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0554600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 224.43 | 0.704 | 10.9 | -0.0861 | 4.13 | -3.93 | -0.182 | -1.36 | -0.179 | 9.93 | 0.7795 | 231 | 11.3 | 7.22 |
| 224.79 | 0.698 | 10.9 | -0.145 | 4.13 | -3.74 | 0.0144 | -- | -0.164 | 9.96 | 0.5002 | 221 | 11.4 | 7.25 |
| 222.05 | 0.694 | 10.9 | -0.0874 | 4.14 | -4.12 | -- | -2.36 | -0.151 | 9.92 | 0.4 | 213 | 11.5 | 7.18 |
| 224.47 | 0.698 | 10.9 | -0.137 | 4.15 | -3.72 | -- | -- | -0.165 | 9.93 | 0.4685 | 219 | 11.4 | 7.28 |
| 296.39 | 0.802 | 11 | -0.032 | -- | -5.19 | -- | -0.174 | -0.376 | -- | 44.3 | 620 | 11.2 | 9.4 |
| 292.12 | 0.801 | 10.9 | 0.0486 | 4.57 | -- | -0.168 | -- | -0.112 | 9.63 | -- | -- | -- | -- |
| 292.22 | 0.801 | 10.9 | 0.0423 | 4.57 | -- | -- | -- | -0.113 | 9.63 | -- | -- | -- | -- |
| 287.48 | 0.79 | 11 | -0.0259 | -- | -4.92 | -- | -- | -0.188 | -- | 51.09 | 623 | 11.4 | 9.32 |
| 225.01 | 0.699 | 10.9 | -- | 4.14 | -3.73 | -- | -- | -0.156 | 9.93 | 0.4697 | 219 | 11.4 | 7.28 |
| 1526.93 | 1.83 | 11 | 0.00473 | -- | -- | -- | -- | -0.104 | -- | -- | -- | -- | -- |
| 292.27 | 0.8 | 10.9 | -- | 4.57 | -- | -- | -- | -0.117 | 9.63 | -- | -- | -- | -- |
| 287.12 | 0.789 | 11 | -- | -- | -4.98 | -- | -- | -0.189 | -- | 51.16 | 629 | 11.4 | 9.18 |
| 1526.93 | 1.82 | 11 | -- | -- | -- | -- | -- | -0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 230.54 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 11 | 7 |
| 8 | 233.43 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 7 | 11 |
| 15 | 234.08 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 20 | 235.06 | radiation | 1.0 | 270 | < th | dose independent | rect. | 11 | 7 |
| 56 | 237.62 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 4 |
| 78 | 238.70 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 16 |
| 82 | 238.87 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 85 | 239.06 | humidity | 80.0 | 90 | > th | dose independent | rect. | 12 | 8 |
| 115 | 240.94 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 10 | 11 |
| 119 | 241.03 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 139 | 241.97 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 16 |
| 143 | 242.30 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 144 | 242.30 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 145 | 242.46 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 151 | 242.70 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 8 |
| 191 | 243.24 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 9 |
| 206 | 243.79 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 211 | 243.83 | radiation | 1.0 | 90 | > th | dose independent | sin | 23 | NA |
| 212 | 243.88 | radiation | 1.0 | 90 | < th | dose independent | sin | 23 | NA |
| 226 | 244.03 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 232 | 244.05 | humidity | 80.0 | 720 | < th | dose independent | rect. | 11 | 10 |
| 256 | 244.31 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 266 | 244.44 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 270 | 244.47 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 272 | 244.47 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 275 | 244.48 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 282 | 244.58 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 297 | 244.70 | temperature | 25.0 | 90 | < th | dose independent | rect. | 13 | 8 |
| 306 | 244.81 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 8 | 19 |
| 324 | 245.14 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 6 |
| 326 | 245.15 | radiation | 1.0 | 30 | < th | dose dependent | sin | 23 | NA |
| 373 | 245.81 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 14 | 13 |
| 407 | 246.21 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 408 | 246.22 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 7 | 13 |
| 409 | 246.23 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 7 |
| 416 | 246.29 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 428 | 246.46 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 450 | 246.69 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 459 | 246.78 | humidity | 70.0 | 720 | > th | dose independent | rect. | 14 | 5 |
| 472 | 246.97 | humidity | 80.0 | 10 | > th | dose independent | rect. | 10 | 10 |
| 494 | 247.19 | humidity | 70.0 | 720 | > th | dose dependent | rect. | 11 | 9 |
| 513 | 247.41 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 12 |
| 522 | 247.48 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 1 |
| 556 | 247.73 | humidity | 70.0 | 10 | > th | dose dependent | sin | 20 | NA |
| 691 | 248.85 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 694 | 248.92 | humidity | 70.0 | 720 | > th | dose independent | rect. | 14 | 14 |
| 718 | 249.09 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 13 | 16 |
| 735 | 249.21 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 743 | 249.24 | humidity | 80.0 | 720 | > th | dose independent | rect. | 11 | 16 |
| 744 | 249.24 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 8 | 12 |
| 747 | 249.27 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 759 | 249.32 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 2 | 14 |
| 780 | 249.47 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 22 |
| 797 | 249.55 | humidity | 60.0 | 720 | > th | dose dependent | sin | 18 | NA |
| 876 | 250.01 | humidity | 80.0 | 10 | > th | dose independent | rect. | 8 | 12 |
| 885 | 250.06 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 889 | 250.06 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 934 | 250.20 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 936 | 250.20 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 938 | 250.20 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 990 | 250.20 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 992 | 250.20 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 994 | 250.20 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |