BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0507400 Os06g0507400|AK066411
         (536 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os06g0507400  Similar to GAMYB-binding protein (Fragment)         984   0.0  
Os02g0260700  Similar to GAMYB-binding protein (Fragment)         807   0.0  
Os06g0507300  Similar to GAMYB-binding protein                    172   7e-43

>Os06g0507400 Similar to GAMYB-binding protein (Fragment)
          Length = 536

 Score =  984 bits (2544), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/536 (89%), Positives = 482/536 (89%)

Query: 1   MDPDFSRASRGPXXXXXXXXXXXXDRVLRIEIVXXXXXXXXXXXXXXXCSSLADWAHQXX 60
           MDPDFSRASRGP            DRVLRIEIV               CSSLADWAHQ  
Sbjct: 1   MDPDFSRASRGPSFAFAFNSVNFSDRVLRIEIVAGDDAAGAKGAAGEGCSSLADWAHQRK 60

Query: 61  XXXXXXXXXXXSGKYTDLETCKVXXXXXXXXXXXXXXPVAMIEESPPDIGQDGEDGDSCD 120
                      SGKYTDLETCKV              PVAMIEESPPDIGQDGEDGDSCD
Sbjct: 61  RRREELRREKESGKYTDLETCKVEAEECDTYEENNEEPVAMIEESPPDIGQDGEDGDSCD 120

Query: 121 SSWSMECTQVLRVKSIYISSAILAAESPFFYKLFSNGMKESDQRHATLRITASEENALME 180
           SSWSMECTQVLRVKSIYISSAILAAESPFFYKLFSNGMKESDQRHATLRITASEENALME
Sbjct: 121 SSWSMECTQVLRVKSIYISSAILAAESPFFYKLFSNGMKESDQRHATLRITASEENALME 180

Query: 181 LLSFMYSGKLTTNQPTLLLDILMIADKFEVVSCMRHCSQLLRSLPMTTESALLYLDLPSS 240
           LLSFMYSGKLTTNQPTLLLDILMIADKFEVVSCMRHCSQLLRSLPMTTESALLYLDLPSS
Sbjct: 181 LLSFMYSGKLTTNQPTLLLDILMIADKFEVVSCMRHCSQLLRSLPMTTESALLYLDLPSS 240

Query: 241 ISMAAAVQPLTDTAKAFLANKYKDLTKLQDEAMNIPLAGIEAILWSNDLQVASEDAIYDF 300
           ISMAAAVQPLTDTAKAFLANKYKDLTKLQDEAMNIPLAGIEAILWSNDLQVASEDAIYDF
Sbjct: 241 ISMAAAVQPLTDTAKAFLANKYKDLTKLQDEAMNIPLAGIEAILWSNDLQVASEDAIYDF 300

Query: 301 VIKWARSQYPKLEERREILGTRLLPLVRFCHMTCRKLRKVLACNDLDHEQATKCVTEALL 360
           VIKWARSQYPKLEERREILGTRLLPLVRFCHMTCRKLRKVLACNDLDHEQATKCVTEALL
Sbjct: 301 VIKWARSQYPKLEERREILGTRLLPLVRFCHMTCRKLRKVLACNDLDHEQATKCVTEALL 360

Query: 361 YKADAPHRQRTLAADVLTCRKYAERAYKYRPLKVVEFDRPYPQCIAYLDLKREECSRLFP 420
           YKADAPHRQRTLAADVLTCRKYAERAYKYRPLKVVEFDRPYPQCIAYLDLKREECSRLFP
Sbjct: 361 YKADAPHRQRTLAADVLTCRKYAERAYKYRPLKVVEFDRPYPQCIAYLDLKREECSRLFP 420

Query: 421 SGRIYSQAFHLAGQGFFLSAHCNMDQQSAFHCFGLFLGMQEKGSTSVTVDYEFAARTRPS 480
           SGRIYSQAFHLAGQGFFLSAHCNMDQQSAFHCFGLFLGMQEKGSTSVTVDYEFAARTRPS
Sbjct: 421 SGRIYSQAFHLAGQGFFLSAHCNMDQQSAFHCFGLFLGMQEKGSTSVTVDYEFAARTRPS 480

Query: 481 GEFVSKYKGYYTFTGGKAVGYRNLFAIPWSSFMADDSLFFIEGVLHLRAELTIKQP 536
           GEFVSKYKGYYTFTGGKAVGYRNLFAIPWSSFMADDSLFFIEGVLHLRAELTIKQP
Sbjct: 481 GEFVSKYKGYYTFTGGKAVGYRNLFAIPWSSFMADDSLFFIEGVLHLRAELTIKQP 536



>Os02g0260700 Similar to GAMYB-binding protein (Fragment)
          Length = 558

 Score =  807 bits (2084), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 407/543 (74%), Positives = 436/543 (80%), Gaps = 7/543 (1%)

Query: 1   MDPDFSRASRG-PXXXXXXXXXXXXDRVLRIEIVXXXXXXXXXXXXXXX----CSSLADW 55
           MDPDFS    G P            DRVLRIE+V                     SL+DW
Sbjct: 14  MDPDFSGGGGGGPSFEFAFNSVNFSDRVLRIEVVAGDDDDDDDHAPGSSRDGGAGSLSDW 73

Query: 56  A-HQXXXXXXXXXXXXXSGKYTDLETCKVXXXXXXXXXXXXXXPVAMIEESPPDIGQDGE 114
           A H+                  D   CKV              PVAM+++SPP +G DG+
Sbjct: 74  ARHRKRRREELLKEKESEAVMPDQINCKVEPEECDAYEENQEEPVAMMDDSPPSVGPDGD 133

Query: 115 DGDSCDSSWSMEC-TQVLRVKSIYISSAILAAESPFFYKLFSNGMKESDQRHATLRITAS 173
           DG S DS WS    T VLRVK+IYISSAILAA+SPFF+KLFSNGMKESD+R ATLRIT S
Sbjct: 134 DGPSMDSPWSGGVSTPVLRVKNIYISSAILAAKSPFFFKLFSNGMKESDERQATLRITDS 193

Query: 174 EENALMELLSFMYSGKLTTNQPTLLLDILMIADKFEVVSCMRHCSQLLRSLPMTTESALL 233
           EENALMELLSFMYSGKLT+  PTLLLDILM ADKFEV+SCMR+CSQLL SL MTTESALL
Sbjct: 194 EENALMELLSFMYSGKLTSTDPTLLLDILMAADKFEVISCMRYCSQLLTSLTMTTESALL 253

Query: 234 YLDLPSSISMAAAVQPLTDTAKAFLANKYKDLTKLQDEAMNIPLAGIEAILWSNDLQVAS 293
           YLDLP SISMAAAVQPLTD AK +L+NKYKDLTK QDE MNIPLAGIEAIL SNDLQVAS
Sbjct: 254 YLDLPCSISMAAAVQPLTDAAKEYLSNKYKDLTKFQDEVMNIPLAGIEAILSSNDLQVAS 313

Query: 294 EDAIYDFVIKWARSQYPKLEERREILGTRLLPLVRFCHMTCRKLRKVLACNDLDHEQATK 353
           EDAIYDF+I+WAR+QYPK EERREIL +RLLPLVRF HMTCRKLRKVL C DLDHEQATK
Sbjct: 314 EDAIYDFLIRWARAQYPKSEERREILSSRLLPLVRFSHMTCRKLRKVLICTDLDHEQATK 373

Query: 354 CVTEALLYKADAPHRQRTLAADVLTCRKYAERAYKYRPLKVVEFDRPYPQCIAYLDLKRE 413
           CVTEALLYKADAPHRQR LAADV TC+K+AERAYKYRPLKVVEFDRPYPQCIAYLDLKRE
Sbjct: 374 CVTEALLYKADAPHRQRALAADVTTCQKFAERAYKYRPLKVVEFDRPYPQCIAYLDLKRE 433

Query: 414 ECSRLFPSGRIYSQAFHLAGQGFFLSAHCNMDQQSAFHCFGLFLGMQEKGSTSVTVDYEF 473
           ECSRLFPSGR+YSQAFHLAGQGFFLSAHCNM+QQS F+CFGLFLGMQEKGS SVTVDYEF
Sbjct: 434 ECSRLFPSGRMYSQAFHLAGQGFFLSAHCNMEQQSTFYCFGLFLGMQEKGSMSVTVDYEF 493

Query: 474 AARTRPSGEFVSKYKGYYTFTGGKAVGYRNLFAIPWSSFMADDSLFFIEGVLHLRAELTI 533
           AARTRPSGEFVSKYKG YTFTGGKAVGYRNLFAIPWS+FMADDSLFF++GVLHLRAELTI
Sbjct: 494 AARTRPSGEFVSKYKGNYTFTGGKAVGYRNLFAIPWSTFMADDSLFFLDGVLHLRAELTI 553

Query: 534 KQP 536
           KQP
Sbjct: 554 KQP 556



>Os06g0507300 Similar to GAMYB-binding protein
          Length = 201

 Score =  172 bits (435), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 91/150 (60%), Positives = 111/150 (74%), Gaps = 17/150 (11%)

Query: 403 QCIA-YLDLKREECSRLFPSGRIYSQAFHLAGQGFFLSAHCNMDQQSAFHCFGLFLGM-- 459
           +C+A Y+DL REEC RLFPSGR+ SQ   LAG+ F+L+A CNMDQ+  F CFGLFL M  
Sbjct: 50  RCVAAYMDLTREECGRLFPSGRLRSQPLRLAGRPFYLTARCNMDQRDTFRCFGLFLAMEV 109

Query: 460 -----QEKGS----TSVTVDYEFAARTR-PSG-EFVSKYKGYYTFTGGKAVGYRNLFAIP 508
                +E+GS     SVTV+Y+FAARTR  SG EFVS YKG+YTF  GK+ GYRNL  +P
Sbjct: 110 DDEEEEEEGSPSPAASVTVEYDFAARTRQQSGDEFVSMYKGHYTFAAGKSCGYRNLLGMP 169

Query: 509 WSSFMAD---DSLFFIEGVLHLRAELTIKQ 535
           W+SFM D   DS+FFI+GVLHLRAEL +K+
Sbjct: 170 WASFMGDGGGDSVFFIDGVLHLRAELCVKE 199



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,650,744
Number of extensions: 597791
Number of successful extensions: 1161
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1157
Number of HSP's successfully gapped: 3
Length of query: 536
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 430
Effective length of database: 11,501,117
Effective search space: 4945480310
Effective search space used: 4945480310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)