FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0507400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GAMYB-binding protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0245) R2 : 0.212
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.67 (0.061) R2dC : 0.21 R2C : 0.207
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.08 (0.0515) R2dN8 : 0.0054 R2N8 : 0.00236
σ : 0.461
deviance : 97.24
__
_____
C
peak time of C : 8.97
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.61 0.452 10.8 -0.0981 0.646 -0.533 0.0428 -1.03 -0.0895 8.98 6.999 4196 -- --
93.15 0.45 10.8 -0.128 0.668 -0.358 0.0166 -- -0.0713 8.93 6.799 4196 -- --
92.62 0.448 10.8 -0.0967 0.646 -0.533 -- -1.02 -0.0896 8.97 6.998 4196 -- --
93.12 0.449 10.8 -0.112 0.654 -0.374 -- -- -0.068 9 6.754 4196 -- --
116.06 0.502 10.8 -0.0988 -- -0.538 -- -0.738 -0.0893 -- 7 4345 -- --
95.66 0.459 10.8 -0.245 0.67 -- 0.0367 -- -0.107 8.95 -- -- -- --
95.66 0.458 10.8 -0.244 0.67 -- -- -- -0.107 8.94 -- -- -- --
116.66 0.503 10.8 -0.0747 -- -0.481 -- -- -0.0726 -- 6.9 4396 -- --
93.43 0.45 10.8 -- 0.654 -0.396 -- -- -0.0632 8.98 6.75 4198 -- --
121.37 0.515 10.8 -0.245 -- -- -- -- -0.103 -- -- -- -- --
97.24 0.461 10.8 -- 0.67 -- -- -- -0.08 8.97 -- -- -- --
116.24 0.502 10.8 -- -- -0.51 -- -- -0.0723 -- 7.6 4361 -- --
122.94 0.518 10.8 -- -- -- -- -- -0.0756 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.23 temperature 30 10 > th dose independent rect. 10 1
3 90.43 radiation 10 4320 < th dose independent rect. 16 1
4 90.67 wind 3 720 < th dose independent rect. 22 5
6 90.95 temperature 25 270 < th dose independent rect. 5 1
9 91.12 temperature 25 720 > th dose independent rect. 23 1
11 91.19 temperature 25 720 < th dose independent rect. 13 17
17 91.24 temperature 20 1440 > th dose dependent rect. 20 1
20 91.29 temperature 25 720 > th dose independent rect. 14 13
23 91.32 temperature 20 720 > th dose dependent rect. 22 11
24 91.33 radiation 10 4320 > th dose independent rect. 16 1
26 91.34 temperature 20 720 > th dose independent rect. 3 2
27 91.34 temperature 25 270 < th dose independent rect. 7 6
29 91.36 radiation 10 4320 < th dose independent rect. 16 7
52 91.42 temperature 25 270 < th dose independent rect. 7 4
55 91.42 temperature 25 720 > th dose independent rect. 14 16
56 91.43 radiation 40 10 > th dose independent rect. 9 3
83 91.46 temperature 25 270 < th dose independent rect. 9 2
85 91.47 temperature 25 1440 > th dose independent rect. 18 1
88 91.47 temperature 30 10 > th dose independent rect. 18 17
99 91.50 temperature 25 1440 < th dose independent rect. 18 3
118 91.51 radiation 40 10 < th dose independent rect. 3 23
119 91.51 radiation 10 10 > th dose dependent rect. 9 3
123 91.53 temperature 25 1440 > th dose dependent rect. 18 1
130 91.54 wind 3 1440 > th dose independent rect. 22 5
133 91.54 temperature 20 720 > th dose dependent rect. 3 2
182 91.63 atmosphere 1000 90 < th dose independent rect. 24 3
187 91.64 humidity 70 1440 > th dose independent rect. 10 1
188 91.64 wind 3 1440 > th dose independent rect. 23 2
204 91.67 atmosphere 1000 90 < th dose dependent rect. 24 3
221 91.69 radiation 20 10 > th dose dependent rect. 15 21
228 91.70 temperature 25 720 < th dose dependent rect. 2 6
249 91.72 temperature 25 720 < th dose independent sin 14 NA
250 91.72 radiation 40 10 < th dose independent sin 8 NA
255 91.72 radiation 40 10 < th dose dependent rect. 3 23
269 91.74 wind 9 720 < th dose dependent rect. 22 5
284 91.77 temperature 30 10 < th dose independent rect. 3 8
285 91.77 radiation 40 10 < th dose independent rect. 3 8
306 91.80 radiation 40 10 > th dose independent sin 9 NA
321 91.81 temperature 25 720 > th dose independent sin 14 NA
343 91.83 temperature 20 720 > th dose dependent sin 9 NA
345 91.83 atmosphere 1000 90 < th dose dependent rect. 24 1
368 91.86 temperature 25 90 > th dose dependent rect. 7 3
387 91.89 temperature 25 720 < th dose dependent rect. 5 2
388 91.89 temperature 25 10 > th dose dependent rect. 7 4
400 91.91 humidity 90 270 > th dose independent rect. 4 2
416 91.93 humidity 70 1440 < th dose independent rect. 10 1
429 91.94 temperature 20 1440 > th dose dependent sin 12 NA
430 91.94 temperature 30 10 > th dose dependent rect. 10 1
484 91.97 humidity 70 1440 > th dose independent rect. 9 3
513 91.99 temperature 25 720 < th dose independent rect. 23 7
514 91.99 humidity 60 90 > th dose independent rect. 3 8
525 92.00 radiation 40 90 < th dose independent rect. 3 8
541 92.01 temperature 25 1440 < th dose independent rect. 23 4
545 92.01 wind 3 14400 < th dose independent rect. 6 7
558 92.02 temperature 30 10 < th dose independent rect. 11 17
587 92.05 atmosphere 995 43200 > th dose independent rect. 17 16
599 92.06 atmosphere 995 43200 < th dose independent rect. 17 16
614 92.07 wind 3 14400 > th dose independent rect. 6 7
663 92.09 atmosphere 995 43200 < th dose dependent rect. 16 9
707 92.11 radiation 40 10 < th dose dependent rect. 4 7
713 92.11 temperature 30 270 < th dose dependent rect. 17 14
741 92.13 temperature 20 30 > th dose dependent rect. 3 8
773 92.15 temperature 30 90 < th dose dependent rect. 19 14
778 92.16 wind 1 30 > th dose independent rect. 4 5
787 92.16 radiation 30 10 > th dose dependent sin 9 NA
791 92.16 atmosphere 995 43200 < th dose dependent rect. 17 7
804 92.17 atmosphere 995 43200 > th dose independent rect. 17 13
807 92.17 radiation 20 4320 < th dose dependent rect. 16 1
817 92.18 temperature 25 720 > th dose independent rect. 20 7
820 92.18 atmosphere 995 43200 < th dose independent rect. 17 12
831 92.19 atmosphere 995 43200 < th dose independent sin 12 NA
834 92.19 atmosphere 1005 14400 < th dose independent rect. 23 1
843 92.19 humidity 70 1440 > th dose independent rect. 19 17
849 92.20 atmosphere 995 43200 > th dose independent sin 11 NA
851 92.20 temperature 25 720 < th dose independent rect. 23 2
855 92.20 atmosphere 995 43200 < th dose independent rect. 18 6
856 92.20 atmosphere 995 43200 > th dose independent rect. 18 7
861 92.20 wind 1 43200 < th dose dependent rect. 19 2
872 92.21 temperature 30 720 < th dose dependent sin 8 NA
915 92.23 temperature 30 90 < th dose dependent rect. 3 6
922 92.23 atmosphere 995 43200 < th dose dependent rect. 14 13
934 92.24 humidity 70 1440 < th dose independent rect. 18 18
978 92.27 temperature 30 90 < th dose independent rect. 9 18
989 92.28 wind 5 4320 < th dose independent rect. 9 1