BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0507400 Os06g0507400|AK066411
(536 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G61600.1 | chr3:22795704-22797953 FORWARD LENGTH=562 648 0.0
AT2G46260.1 | chr2:18996111-18998463 FORWARD LENGTH=562 636 0.0
AT4G01160.1 | chr4:494976-497006 REVERSE LENGTH=506 471 e-133
AT2G30600.5 | chr2:13037410-13041475 FORWARD LENGTH=856 54 2e-07
>AT3G61600.1 | chr3:22795704-22797953 FORWARD LENGTH=562
Length = 561
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/549 (59%), Positives = 398/549 (72%), Gaps = 22/549 (4%)
Query: 1 MDPDFSR--ASRGPXXXXXXXXXXXXDRVLRIEIVXXXXXXXXXXXXXXXCSSLADWAHQ 58
MDPDF+R +S DR+LRIEI+ C+S+ADWA
Sbjct: 17 MDPDFTRHGSSSDGDFGFAFNDSNFSDRLLRIEIMGGPSDSRSEVEG---CTSIADWARH 73
Query: 59 XXXXXXXXXXXXXSG-KYTDLETCKVXXXXXXXXXXXXXXPVAMIEESPPDIGQDG---- 113
SG +D+ C P E+P D G +
Sbjct: 74 RKRRREDIKKE--SGVTISDIVACPEEQILTDEQPDMDGCPGG---ENPDDEGGEAMVEE 128
Query: 114 -----EDGDSCDSSWSMECTQVLRVKSIYISSAILAAESPFFYKLFSNGMKESDQRHATL 168
E+ S + +W M+C+ V+RVK ++ISS ILAA+SPFFYKLFSNGM+ES+QRH TL
Sbjct: 129 ALSGDEEETSSEPNWGMDCSTVVRVKELHISSPILAAKSPFFYKLFSNGMRESEQRHVTL 188
Query: 169 RITASEENALMELLSFMYSGKLTTNQPTLLLDILMIADKFEVVSCMRHCSQLLRSLPMTT 228
RI ASEE ALMELL+FMYS ++ LLD+LM ADKFEV SCMR+CS+LLR++PMT
Sbjct: 189 RINASEEAALMELLNFMYSNAVSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTP 248
Query: 229 ESALLYLDLPSSISMAAAVQPLTDTAKAFLANKYKDLTKLQDEAMNIPLAGIEAILWSND 288
ESALLYL+LPSS+ MA AVQPLTD AK FLA +YKD+TK +E M++PLAGIEAIL S++
Sbjct: 249 ESALLYLELPSSVLMAKAVQPLTDAAKQFLAARYKDITKFHEEVMSLPLAGIEAILSSDE 308
Query: 289 LQVASEDAIYDFVIKWARSQYPKLEERREILGTRLLPLVRFCHMTCRKLRKVLACNDLDH 348
LQ+ASEDA+YDF++KWAR+QYP LEERREILG+RL +RF MTCRKL+KVL C+D +H
Sbjct: 309 LQIASEDAVYDFILKWARAQYPCLEERREILGSRLALSIRFPFMTCRKLKKVLTCSDFEH 368
Query: 349 EQATKCVTEALLYKADAPHRQRTLAADVLTC--RKYAERAYKYRPLKVVEFDRPYPQCIA 406
E A+K V EAL +KA+APHRQR+LA++ R+ ERAYKYRP+KVVEF+ P PQC+
Sbjct: 369 EIASKLVLEALFFKAEAPHRQRSLASEESASLNRRLIERAYKYRPVKVVEFELPRPQCVV 428
Query: 407 YLDLKREECSRLFPSGRIYSQAFHLAGQGFFLSAHCNMDQQSAFHCFGLFLGMQEKGSTS 466
YLDLKREEC LFPSGR+YSQAFHL GQGFFLSAHCNMDQQS+FHCFGLFLGMQEKGS S
Sbjct: 429 YLDLKREECGGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGSVS 488
Query: 467 VTVDYEFAARTRPSGEFVSKYKGYYTFTGGKAVGYRNLFAIPWSSFMADDSLFFIEGVLH 526
VDYEF+AR++P+ +F+SKYKG YTFTGGKAVGYRNLF +PW+SF+A+DS +FI G+LH
Sbjct: 489 FGVDYEFSARSKPAEDFISKYKGNYTFTGGKAVGYRNLFGVPWTSFIAEDSQYFINGILH 548
Query: 527 LRAELTIKQ 535
LRAELTIK+
Sbjct: 549 LRAELTIKR 557
>AT2G46260.1 | chr2:18996111-18998463 FORWARD LENGTH=562
Length = 561
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/550 (58%), Positives = 392/550 (71%), Gaps = 24/550 (4%)
Query: 1 MDPDFSR--ASRGPXXXXXXXXXXXXDRVLRIEIVXXXXXXXXXXXXXXXCSSLADWAHQ 58
MD +FSR +S DR+LRIEI+ C+S+ADWA
Sbjct: 16 MDSNFSRHGSSSEGDFGFAFNDSNFSDRLLRIEILGGPSDSRSDAEG---CTSIADWARH 72
Query: 59 XXXXXXXXXXXXXSGKYTDLETCKVXXXXXXXXX----------XXXXXPVAMIEESPPD 108
+D+ C AM+EE+
Sbjct: 73 RKRRREDNKKDNGVA-ISDIVACAEEQILTDNNQPDMDDAPGGDNLDDEGEAMVEEA--- 128
Query: 109 IGQDGEDGDSCDSSWSMECTQVLRVKSIYISSAILAAESPFFYKLFSNGMKESDQRHATL 168
G+D S + +W ++C+ V+RVK ++ISS ILAA+SPFFYKLFSNGM+ES+QRH TL
Sbjct: 129 --LSGDDDASSEPNWGIDCSTVVRVKELHISSPILAAKSPFFYKLFSNGMRESEQRHVTL 186
Query: 169 RITASEENALMELLSFMYSGKLTTNQPTLLLDILMIADKFEVVSCMRHCSQLLRSLPMTT 228
RI+A EE ALMELL+FMYS L+ LLD+LM ADKFEV SCMR+CS+LLR++PMT
Sbjct: 187 RISAQEEGALMELLNFMYSNSLSVTTAPALLDVLMAADKFEVASCMRYCSRLLRNMPMTP 246
Query: 229 ESALLYLDLPSSISMAAAVQPLTDTAKAFLANKYKDLTKLQDEAMNIPLAGIEAILWSND 288
+SALLYL+LPSS+ MA AVQPLTD AK FLA++YKD+TK DE M +PLAGIEAIL S+D
Sbjct: 247 DSALLYLELPSSVLMAEAVQPLTDAAKQFLASRYKDITKFHDEVMALPLAGIEAILSSDD 306
Query: 289 LQVASEDAIYDFVIKWARSQYPKLEERREILGTRLLPLVRFCHMTCRKLRKVLACNDLDH 348
LQ+ASEDA+YDFV+KWAR QY LE+RREILG+RL +RF +MTCRKL+KVL C+D +H
Sbjct: 307 LQIASEDAVYDFVLKWARGQYSSLEDRREILGSRLALYIRFPYMTCRKLKKVLTCSDFEH 366
Query: 349 EQATKCVTEALLYKADAPHRQRTLAADVLTC--RKYAERAYKYRPLKVVEFDRPYPQCIA 406
E A+K V EAL +KA+APHRQR LAA+ R++ ERAYKYRP+KVVEF+ P PQC+
Sbjct: 367 EVASKQVLEALFFKAEAPHRQRILAAEGSDSMNRRFIERAYKYRPVKVVEFELPRPQCVV 426
Query: 407 YLDLKREECSRLFPSGRIYSQAFHLAGQGFFLSAHCNMDQQSAFHCFGLFLGMQEKGSTS 466
YLDLKREEC+ LFPSGR+YSQAFHL GQGFFLSAHCNMDQQS+FHCFGLFLGMQEKG+ S
Sbjct: 427 YLDLKREECAGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQEKGAVS 486
Query: 467 VTVDYEFAARTRPSG-EFVSKYKGYYTFTGGKAVGYRNLFAIPWSSFMADDSLFFIEGVL 525
VDYEFAAR + + E+VSKYKG YTFTGGKAVGYRNLF IPW+SF+A+DS FI G+L
Sbjct: 487 FGVDYEFAARDKSTKEEYVSKYKGNYTFTGGKAVGYRNLFGIPWTSFIAEDSQHFINGIL 546
Query: 526 HLRAELTIKQ 535
HLRAELTIK+
Sbjct: 547 HLRAELTIKR 556
>AT4G01160.1 | chr4:494976-497006 REVERSE LENGTH=506
Length = 505
Score = 471 bits (1211), Expect = e-133, Method: Compositional matrix adjust.
Identities = 255/516 (49%), Positives = 333/516 (64%), Gaps = 38/516 (7%)
Query: 25 DRVLRIEIVXXXXXXXXXXXXXXXCSSLADWAHQXXXXXXXXXXXXXSGKYTDLETCKVX 84
DR+LRIEI CSS+ DWA + K L T
Sbjct: 21 DRLLRIEITQSSGEGEVI------CSSIVDWARDRKRRREDIVNENSNNKTQVLVTAA-- 72
Query: 85 XXXXXXXXXXXXXPVAMIEESPPDIGQDGEDGDSCDSSWSMECTQVLRVKSIYISSAILA 144
E+ P G+D + + ++ T VL V+ ++ISSAILA
Sbjct: 73 ------------------EQEPKSGGEDENERLTNNN------TSVLSVQELHISSAILA 108
Query: 145 AESPFFYKLFSNGMKESDQRHATLRITASEENALMELLSFMYSGKLTTNQPTLLLDILMI 204
A+SPFFYKLFSNGM ES+Q+ TL+I ASEE A+MELL FMYS L+ + LLD+LM+
Sbjct: 109 AKSPFFYKLFSNGMLESEQKQMTLKIDASEETAVMELLKFMYSNSLSVTASSALLDVLMV 168
Query: 205 ADKFEVVSCMRHCSQLLRSLPMTTESALLYLDLPSSISMAAAVQPLTDTAKAFLANKYKD 264
ADKFEV SCM++CSQLL +PMT ES+LL LDLPSS+ MA +V+PLT+ A+ F+A++YK+
Sbjct: 169 ADKFEVASCMKYCSQLLLKMPMTLESSLLLLDLPSSLLMADSVKPLTNAARQFIASRYKN 228
Query: 265 LTKL-QDEAMNIPLAGIEAILWSNDLQVASEDAIYDFVIKWARSQYPKLEERREILGTRL 323
++K+ +E M +PL GIEAIL S+ L++ SED +Y+ V+KW +S Y LE R+E+LG+ L
Sbjct: 229 MSKITMEELMALPLVGIEAILASDGLEIQSEDVVYEVVLKWVKSHYSVLEARQEVLGSHL 288
Query: 324 LPLVRFCHMTCRKLRKVLACNDLDHEQATKCVTEALLYKADAPHRQRTLAAD---VLTCR 380
+RF HMT +L+K+L ND A+K V EAL +K ++ Q L A T R
Sbjct: 289 ARYIRFPHMTTDRLKKILTSNDFRPSVASKLVVEALFFKTESLAHQHVLLAHEQPASTSR 348
Query: 381 KYAERAYKYRPLKVVEFDRPYPQCIAYLDLKREECSRLFPSGRIYSQAFHLAGQGFFLSA 440
++A+RAY +RP+K+VEF P PQCI YLDLKR+EC ++PS RI SQ F L GQGFFLSA
Sbjct: 349 RFAKRAYVHRPIKIVEFAVPRPQCIIYLDLKRKECESIYPSSRISSQQFTLGGQGFFLSA 408
Query: 441 HCNMDQQSAFHCFGLFLGMQEKG--STSVTVDYEFAARTRPSGEFVSKYKGYYTFTGGKA 498
CNMD HCFGLF+GMQE G S SVTVDY+F+ R++P+ EFV K+KG YTFT GKA
Sbjct: 409 QCNMDHLCLIHCFGLFIGMQENGSASASVTVDYDFSVRSKPTMEFVGKFKGIYTFTRGKA 468
Query: 499 VGYRNLFAIPWSSFMADDSLFFIEGVLHLRAELTIK 534
VG RNL IPW F A + +FI VLHLRA+L+I+
Sbjct: 469 VGCRNLLGIPWDIFTAKNCPYFINDVLHLRADLSIR 504
>AT2G30600.5 | chr2:13037410-13041475 FORWARD LENGTH=856
Length = 855
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 141 AILAAESPFFYKLFSNGMKESDQRHATLRITASEENALMELLSFMYSGKL----TTNQPT 196
IL+ S F K+F+NGM ES +T+ +T A +++FMYSG+L T N T
Sbjct: 369 VILSLWSVAFAKMFTNGMSESHS--STIYLTDVSPEAFKAMMNFMYSGELNMEDTVNFGT 426
Query: 197 LLLDILMIADKFEVVSCMRHCSQLL 221
L+ +L +AD+F VV + C ++L
Sbjct: 427 ELIHLLFLADRFGVVPLHQECCKML 451
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,104,802
Number of extensions: 394489
Number of successful extensions: 822
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 817
Number of HSP's successfully gapped: 4
Length of query: 536
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 433
Effective length of database: 8,282,721
Effective search space: 3586418193
Effective search space used: 3586418193
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)