Os06g0507300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GAMYB-binding protein.
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Os06g0507300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GAMYB-binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 232.31 | 0.716 | 4.29 | 1 | 0.952 | -0.636 | 2.53 | 2.51 | -0.00372 | 16.5 | 20.6 | 4364 | -- | -- |
| 243 | 0.726 | 4.37 | 0.818 | 0.891 | -0.987 | 2.19 | -- | 0.00812 | 16.4 | 21.18 | 11264 | -- | -- |
| 248.78 | 0.735 | 4.29 | 1.04 | 0.976 | -0.602 | -- | 2.58 | 0.0114 | 16.6 | 20.9 | 4544 | -- | -- |
| 253.08 | 0.741 | 4.37 | 1.07 | 1.02 | -1.3 | -- | -- | 0.0489 | 16.7 | 18.7 | 14606 | -- | -- |
| 299.57 | 0.806 | 4.27 | 1.04 | -- | -0.698 | -- | 2.5 | 0.0103 | -- | 20.6 | 4387 | -- | -- |
| 261.38 | 0.758 | 4.46 | -0.0973 | 0.976 | -- | 2.4 | -- | -0.421 | 16.5 | -- | -- | -- | -- |
| 276.81 | 0.779 | 4.46 | -0.0801 | 0.995 | -- | -- | -- | -0.408 | 16.6 | -- | -- | -- | -- |
| 299.56 | 0.806 | 4.34 | 1.5 | -- | -1.66 | -- | -- | 0.0376 | -- | 16.16 | 47400 | -- | -- |
| 259.54 | 0.75 | 4.41 | -- | 0.972 | -0.664 | -- | -- | -0.174 | 16.7 | 22.62 | 4578 | -- | -- |
| 329.46 | 0.848 | 4.45 | -0.118 | -- | -- | -- | -- | -0.434 | -- | -- | -- | -- | -- |
| 276.98 | 0.779 | 4.46 | -- | 0.996 | -- | -- | -- | -0.399 | 16.6 | -- | -- | -- | -- |
| 307.95 | 0.817 | 4.39 | -- | -- | -0.734 | -- | -- | -0.169 | -- | 22.65 | 4180 | -- | -- |
| 329.83 | 0.848 | 4.45 | -- | -- | -- | -- | -- | -0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 222.66 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 3 | 222.82 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 5 | 224.19 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 6 | 224.25 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 8 | 224.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 13 | 226.12 | radiation | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 56 | 227.15 | radiation | 20 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 71 | 227.44 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 79 | 228.16 | humidity | 70 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 82 | 228.38 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 101 | 228.75 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 107 | 228.94 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 114 | 229.11 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 115 | 229.11 | atmosphere | 1005 | 14400 | > th | dose dependent | rect. | 16 | 3 |
| 116 | 229.12 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 133 | 229.36 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 18 |
| 149 | 229.58 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 165 | 229.78 | humidity | 90 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 185 | 229.83 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 187 | 229.84 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 197 | 229.90 | humidity | 70 | 43200 | < th | dose dependent | rect. | 16 | 5 |
| 200 | 229.93 | radiation | 20 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 204 | 229.94 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 206 | 229.95 | radiation | 20 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 209 | 229.96 | radiation | 20 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 221 | 229.98 | humidity | 60 | 43200 | > th | dose independent | rect. | 14 | 14 |
| 229 | 230.02 | humidity | 60 | 43200 | < th | dose independent | sin | 16 | NA |
| 235 | 230.04 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 19 |
| 238 | 230.05 | humidity | 60 | 43200 | > th | dose independent | sin | 15 | NA |
| 240 | 230.05 | humidity | 60 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 245 | 230.06 | humidity | 70 | 43200 | < th | dose independent | rect. | 16 | 17 |
| 267 | 230.11 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 271 | 230.12 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 272 | 230.12 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 277 | 230.12 | humidity | 60 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 278 | 230.12 | humidity | 70 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 282 | 230.13 | humidity | 60 | 43200 | > th | dose independent | rect. | 7 | 21 |
| 294 | 230.16 | humidity | 70 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 298 | 230.17 | humidity | 60 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 299 | 230.17 | humidity | 60 | 43200 | < th | dose independent | rect. | 14 | 9 |
| 306 | 230.17 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 317 | 230.18 | humidity | 70 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 371 | 230.26 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 425 | 230.31 | humidity | 60 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 444 | 230.33 | humidity | 60 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 446 | 230.34 | humidity | 60 | 43200 | > th | dose independent | no | NA | NA |
| 453 | 230.34 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 454 | 230.34 | humidity | 60 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 464 | 230.35 | humidity | 60 | 43200 | < th | dose independent | rect. | 3 | 20 |
| 469 | 230.35 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 494 | 230.37 | humidity | 60 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 495 | 230.37 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 21 |
| 503 | 230.37 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 23 |
| 526 | 230.39 | humidity | 60 | 43200 | < th | dose independent | no | NA | NA |
| 528 | 230.39 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 639 | 230.48 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 640 | 230.48 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 11 | 8 |
| 709 | 230.54 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 11 | 8 |
| 715 | 230.54 | humidity | 60 | 43200 | > th | dose independent | rect. | 16 | 23 |
| 741 | 230.58 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 742 | 230.58 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 749 | 230.58 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 17 | NA |
| 754 | 230.59 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 755 | 230.59 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 812 | 230.64 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 825 | 230.64 | atmosphere | 1005 | 14400 | > th | dose dependent | sin | 18 | NA |
| 904 | 230.72 | humidity | 60 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 929 | 230.76 | humidity | 60 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 945 | 230.78 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 3 | 1 |