BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os06g0507300 Os06g0507300|AK111324
         (201 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G46260.1  | chr2:18996111-18998463 FORWARD LENGTH=562          153   6e-38
AT3G61600.1  | chr3:22795704-22797953 FORWARD LENGTH=562          153   6e-38
AT4G01160.1  | chr4:494976-497006 REVERSE LENGTH=506              125   1e-29

>AT2G46260.1 | chr2:18996111-18998463 FORWARD LENGTH=562
          Length = 561

 Score =  153 bits (387), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/149 (51%), Positives = 99/149 (66%), Gaps = 16/149 (10%)

Query: 50  RCVAAYMDLTREECGRLFPSGRLRSQPLRLAGRPFYLTARCNMDQRDTFRCFGLFLAMXX 109
           +CV  Y+DL REEC  LFPSGR+ SQ   L G+ F+L+A CNMDQ+ +F CFGLFL M  
Sbjct: 423 QCVV-YLDLKREECAGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGM-- 479

Query: 110 XXXXXXXXGSPSPAASVTVEYDFAARTRQQSGDEFVSMYKGHYTFAAGKSCGYRNLLGMP 169
                        A S  V+Y+FAAR +  + +E+VS YKG+YTF  GK+ GYRNL G+P
Sbjct: 480 ---------QEKGAVSFGVDYEFAARDK-STKEEYVSKYKGNYTFTGGKAVGYRNLFGIP 529

Query: 170 WASFMGDGGGDSVFFIDGVLHLRAELCVK 198
           W SF+ +   DS  FI+G+LHLRAEL +K
Sbjct: 530 WTSFIAE---DSQHFINGILHLRAELTIK 555



>AT3G61600.1 | chr3:22795704-22797953 FORWARD LENGTH=562
          Length = 561

 Score =  153 bits (386), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/149 (50%), Positives = 101/149 (67%), Gaps = 17/149 (11%)

Query: 50  RCVAAYMDLTREECGRLFPSGRLRSQPLRLAGRPFYLTARCNMDQRDTFRCFGLFLAMXX 109
           +CV  Y+DL REECG LFPSGR+ SQ   L G+ F+L+A CNMDQ+ +F CFGLFL M  
Sbjct: 425 QCVV-YLDLKREECGGLFPSGRVYSQAFHLGGQGFFLSAHCNMDQQSSFHCFGLFLGMQE 483

Query: 110 XXXXXXXXGSPSPAASVTVEYDFAARTRQQSGDEFVSMYKGHYTFAAGKSCGYRNLLGMP 169
                        + S  V+Y+F+AR++    ++F+S YKG+YTF  GK+ GYRNL G+P
Sbjct: 484 KG-----------SVSFGVDYEFSARSK--PAEDFISKYKGNYTFTGGKAVGYRNLFGVP 530

Query: 170 WASFMGDGGGDSVFFIDGVLHLRAELCVK 198
           W SF+ +   DS +FI+G+LHLRAEL +K
Sbjct: 531 WTSFIAE---DSQYFINGILHLRAELTIK 556



>AT4G01160.1 | chr4:494976-497006 REVERSE LENGTH=506
          Length = 505

 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 92/149 (61%), Gaps = 15/149 (10%)

Query: 50  RCVAAYMDLTREECGRLFPSGRLRSQPLRLAGRPFYLTARCNMDQRDTFRCFGLFLAMXX 109
           +C+  Y+DL R+EC  ++PS R+ SQ   L G+ F+L+A+CNMD      CFGLF+ M  
Sbjct: 371 QCII-YLDLKRKECESIYPSSRISSQQFTLGGQGFFLSAQCNMDHLCLIHCFGLFIGMQE 429

Query: 110 XXXXXXXXGSPSPAASVTVEYDFAARTRQQSGDEFVSMYKGHYTFAAGKSCGYRNLLGMP 169
                    + S +ASVTV+YDF+ R++     EFV  +KG YTF  GK+ G RNLLG+P
Sbjct: 430 ---------NGSASASVTVDYDFSVRSKPTM--EFVGKFKGIYTFTRGKAVGCRNLLGIP 478

Query: 170 WASFMGDGGGDSVFFIDGVLHLRAELCVK 198
           W  F      +  +FI+ VLHLRA+L ++
Sbjct: 479 WDIF---TAKNCPYFINDVLHLRADLSIR 504



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.138    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,583,280
Number of extensions: 129151
Number of successful extensions: 216
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 3
Length of query: 201
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 107
Effective length of database: 8,529,465
Effective search space: 912652755
Effective search space used: 912652755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)