BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0498100 Os06g0498100|Os06g0498100
(188 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0498100 353 4e-98
Os01g0280100 197 3e-51
Os05g0233800 171 3e-43
Os04g0255100 120 8e-28
Os08g0364100 Nucleotide-binding, alpha-beta plait domain co... 82 3e-16
Os01g0867800 HnRNP-L/PTB/hephaestus splicing factor family ... 70 1e-12
Os05g0437300 HnRNP-L/PTB/hephaestus splicing factor family ... 69 2e-12
Os01g0695000 64 6e-11
>Os06g0498100
Length = 188
Score = 353 bits (906), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 171/188 (90%), Positives = 171/188 (90%)
Query: 1 MALGHDNLVSEPLTMASDADRVLRITVSHLVYPVDEYLLHQLFDGYRAERKIEVRQMGTH 60
MALGHDNLVSEPLTMASDADRVLRITVSHLVYPVDEYLLHQLFDGYRAERKIEVRQMGTH
Sbjct: 1 MALGHDNLVSEPLTMASDADRVLRITVSHLVYPVDEYLLHQLFDGYRAERKIEVRQMGTH 60
Query: 61 VEASVPFQTRAAAEHAWNLNGRAIYDGCCWLDIQWEQQSNNSMTPVTYLSTIITVTPQWK 120
VEASVPFQTRAAAEHAWNLNGRAIYDGCCWLDIQWEQQSNNSMTPVTYLSTIITVTPQWK
Sbjct: 61 VEASVPFQTRAAAEHAWNLNGRAIYDGCCWLDIQWEQQSNNSMTPVTYLSTIITVTPQWK 120
Query: 121 EDIKELRAIMQDXXXXXXXXXXXXXXXXXTGLAMMPTVDMPSIQLIPPAACMVEHEVAVQ 180
EDIKELRAIMQD TGLAMMPTVDMPSIQLIPPAACMVEHEVAVQ
Sbjct: 121 EDIKELRAIMQDLAALLQELAKEKEEEAATGLAMMPTVDMPSIQLIPPAACMVEHEVAVQ 180
Query: 181 QKNIDEYD 188
QKNIDEYD
Sbjct: 181 QKNIDEYD 188
>Os01g0280100
Length = 253
Score = 197 bits (501), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/186 (54%), Positives = 126/186 (67%), Gaps = 12/186 (6%)
Query: 1 MALGHDNLVSEPLTMASDADRVLRITVSHLVYPVDEYLLHQLFDGYRAERKIEVRQMGTH 60
MA GHDNLVSEPLTMAS+A+ HLVYPVDEYLLHQLFDGY AE+ I+V QMGTH
Sbjct: 1 MASGHDNLVSEPLTMASNAN--------HLVYPVDEYLLHQLFDGYGAEKNIKVFQMGTH 52
Query: 61 VEASVPFQTRAAAEHAWNLNGRAIYDGCCWLDIQWEQQSNNSMTPVTYLSTIITVTPQWK 120
VEAS+PFQTRAAAEHAW LNGRAIYDGCCWL+IQW Q S+++ T L + +T +
Sbjct: 53 VEASIPFQTRAAAEHAWKLNGRAIYDGCCWLNIQWAQPSSSTPAAATPL---VGITKELI 109
Query: 121 EDIKELRAIMQDXXXXXXXX-XXXXXXXXXTGLAMMPTVDMPSIQLIPPAACMVEHEVAV 179
++ EL+A++++ LA+M V MP Q+ PPA +VE E+A
Sbjct: 110 ANVLELKAMLKESNASKEVEDGRTKQKVAAVDLAVMAPVAMPLTQMSPPADSLVEQEMAT 169
Query: 180 QQKNID 185
QQK ++
Sbjct: 170 QQKTVE 175
>Os05g0233800
Length = 255
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/131 (65%), Positives = 100/131 (76%), Gaps = 11/131 (8%)
Query: 1 MALGHDNLVSEPLTMASDADRVLRITVSHLVYPVDEYLLHQLFDGYRAERKIEVRQMGTH 60
MA GHDNLVSEPLTMASDAD+VLR+TVSHLVYPVD+Y AERKIEVRQMGTH
Sbjct: 23 MASGHDNLVSEPLTMASDADQVLRVTVSHLVYPVDDY---------GAERKIEVRQMGTH 73
Query: 61 VEASVPFQTRAAAEHAWNLNGRAIYDGCCWLDIQWEQQSNNSMTPVTYLSTIITVTPQWK 120
VEA VPFQTRAAAEHAWNLNGRAIYDGCCWL+IQ +Q S S T + + + +
Sbjct: 74 VEAFVPFQTRAAAEHAWNLNGRAIYDGCCWLNIQCKQPS--SSTQQAAATPLPRIAKKLM 131
Query: 121 EDIKELRAIMQ 131
D+ EL+A+++
Sbjct: 132 ADVLELKAMLK 142
>Os04g0255100
Length = 201
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 90/137 (65%), Gaps = 9/137 (6%)
Query: 1 MALGHDNLVSEPLTMASDADRVLRITVSHLVYPVDEYLLHQLFDGYRAERKIEVRQMGTH 60
MA GHDNLVSEP+TM SDA++VL +T S+L+YPV + LLH++F Y A +KI + QM T
Sbjct: 1 MASGHDNLVSEPVTMNSDAEQVLHVTASNLLYPVTKDLLHRVFYAYGA-KKICLYQMETR 59
Query: 61 VEASVPFQTRAAAEHAWN-LNGRAIYDGCCWLDIQWEQQS----NNSMTPVTYLSTIITV 115
VEASV FQ+R AE+A +G IY GCC +D Q E S N+S P LS II
Sbjct: 60 VEASVQFQSREDAEYARKTFHGHNIYHGCCQMDFQRELPSPVATNSSSAPAKRLSPIIM- 118
Query: 116 TPQWKEDIKELRAIMQD 132
+ K DI+ELR + ++
Sbjct: 119 --ELKADIEELRVVPKE 133
>Os08g0364100 Nucleotide-binding, alpha-beta plait domain containing protein
Length = 220
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 57/83 (68%), Gaps = 2/83 (2%)
Query: 15 MASDADRVLRITVSHLVYPVDEYLLHQLFDGYRAERKIEVRQMGTHVEASVPFQTRAAAE 74
MASD V+R+ V+ ++YPV E +LHQ+ D Y A I V Q +HVEA F +RAAAE
Sbjct: 1 MASDGG-VIRVIVTRVLYPVTEEVLHQVLDPYGAGEMIFVVQFPSHVEAYATFLSRAAAE 59
Query: 75 HAWN-LNGRAIYDGCCWLDIQWE 96
+A + L+G AIY+ CCWLDIQ E
Sbjct: 60 YARDILHGHAIYNDCCWLDIQLE 82
>Os01g0867800 HnRNP-L/PTB/hephaestus splicing factor family protein
Length = 439
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 18 DADRVLRITVSHLVYPVDEYLLHQLFDGYRAERKIEVRQMGTHVEASVPFQTRAAAEHAW 77
+ +R+L +T+ H++YP+ +LHQ+F Y KI Q + + +Q+R +A A+
Sbjct: 94 EPNRILLVTIHHMLYPITIEVLHQVFSPYGFVEKIVTFQKSAGFQTLIQYQSRQSAIQAY 153
Query: 78 N-LNGRAIYDGCCWLDIQWEQQS 99
L+GR IYDGCC LDIQ+ S
Sbjct: 154 GALHGRNIYDGCCQLDIQYSNLS 176
>Os05g0437300 HnRNP-L/PTB/hephaestus splicing factor family protein
Length = 444
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 17 SDADRVLRITVSHLVYPVDEYLLHQLFDGYRAERKIEVRQMGTHVEASVPFQTRAAAEHA 76
S+ +R+L +T+ H++YP+ +LHQ+F Y KI Q +A + +Q+ A A
Sbjct: 98 SEPNRILLVTIHHMMYPITVEVLHQVFKAYGYVEKIVTFQKSAGFQALIQYQSLQEAMDA 157
Query: 77 WN-LNGRAIYDGCCWLDIQWEQQS 99
+ L+GR IYDGCC LDIQ+ S
Sbjct: 158 FGALHGRNIYDGCCQLDIQYSNLS 181
>Os01g0695000
Length = 623
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 66/127 (51%), Gaps = 11/127 (8%)
Query: 12 PLTMASDADRVLRITVSHLVYPVDEYLLHQLFDGYRAERKIEVRQMGTH---VEASVPFQ 68
P + A LR+ VS ++YPV +LHQ+++ Y A + V+ + T VEA V F+
Sbjct: 49 PSWLGDGAGAALRVQVSQVLYPVTSEVLHQVYNTYGA---VAVQVLTTSPLGVEAFVWFR 105
Query: 69 TRAAAEHAWNL-NGRAIYDGCCWLDIQWEQQSNN---SMTPVTYLSTIITVTPQWKEDIK 124
+ AE A ++ NGR IYDGCC LD+Q N +MTP T ST + K D K
Sbjct: 106 SSCDAERARSVTNGRNIYDGCCLLDVQHVHPFNGNGVNMTP-TKCSTPVPSCANIKSDAK 164
Query: 125 ELRAIMQ 131
++
Sbjct: 165 STSTTLE 171
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.132 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,770,874
Number of extensions: 194190
Number of successful extensions: 371
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 371
Number of HSP's successfully gapped: 8
Length of query: 188
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 93
Effective length of database: 12,075,471
Effective search space: 1123018803
Effective search space used: 1123018803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 153 (63.5 bits)