BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0487900 Os06g0487900|AK064330
(522 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0487900 Peptidase C48, SUMO/Sentrin/Ubl1 family protein 1036 0.0
AK064546 239 2e-63
Os05g0207900 Peptidase C48, SUMO/Sentrin/Ubl1 family protein 123 4e-28
Os01g0738100 Peptidase C48, SUMO/Sentrin/Ubl1 family protein 93 6e-19
>Os06g0487900 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
Length = 522
Score = 1036 bits (2679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/508 (98%), Positives = 498/508 (98%)
Query: 15 TELRRFSDVELLEKSRRIQGELSGGIERRLKDRGAKFRRLLDAIVREIDRRKAATDDDRC 74
TELRRFSDVELLEKSRRIQGELSGGIERRLKDRGAKFRRLLDAIVREIDRRKAATDDDRC
Sbjct: 15 TELRRFSDVELLEKSRRIQGELSGGIERRLKDRGAKFRRLLDAIVREIDRRKAATDDDRC 74
Query: 75 ARVVQSGCAESSVKQQAVTISDFRSSFGIDEEAGVDVSHLETSACIGDPKTSTDNEGILC 134
ARVVQSGCAESSVKQQAVTISDFRSSFGIDEEAGVDVSHLETSACIGDPKTSTDNEGILC
Sbjct: 75 ARVVQSGCAESSVKQQAVTISDFRSSFGIDEEAGVDVSHLETSACIGDPKTSTDNEGILC 134
Query: 135 EEEDSCKCKPSTSQKASYVDRSTYMENIDAADDGKDNGYSRICKDAHTSRKRNGEFSPTF 194
EEEDSCKCKPSTSQKASYVDRSTYMENIDAADDGKDNGYSRICKDAHTSRKRNGEFSPTF
Sbjct: 135 EEEDSCKCKPSTSQKASYVDRSTYMENIDAADDGKDNGYSRICKDAHTSRKRNGEFSPTF 194
Query: 195 SMRLRSRKVVEEVVLLDGDTCISDSAEKTSSACDAMKIHYPSWDTPNSIELSYSDMKCXX 254
SMRLRSRKVVEEVVLLDGDTCISDSAEKTSSACDAMKIHYPSWDTPNSIELSYSDMKC
Sbjct: 195 SMRLRSRKVVEEVVLLDGDTCISDSAEKTSSACDAMKIHYPSWDTPNSIELSYSDMKCLE 254
Query: 255 XXXXXXXXILNFYIMYLMGQMPSTSRLGGKYHIFNTYFFSKLEALTSKVDNDAYFLNLRR 314
ILNFYIMYLMGQMPSTSRLGGKYHIFNTYFFSKLEALTSKVDNDAYFLNLRR
Sbjct: 255 PESLLSSPILNFYIMYLMGQMPSTSRLGGKYHIFNTYFFSKLEALTSKVDNDAYFLNLRR 314
Query: 315 WWKGVDIFKKAYIIIPVHADAHWSLVIICMPAKEDQSGPTIFHLDSLKFHSSRFIFSTVE 374
WWKGVDIFKKAYIIIPVHADAHWSLVIICMPAKEDQSGPTIFHLDSLKFHSSRFIFSTVE
Sbjct: 315 WWKGVDIFKKAYIIIPVHADAHWSLVIICMPAKEDQSGPTIFHLDSLKFHSSRFIFSTVE 374
Query: 375 RFLKEEWNYLNKTGSLEDCHLHESVWKNLPRKIKKKAVTVPQQDNEYDCGVFVLYYMRRF 434
RFLKEEWNYLNKTGSLEDCHLHESVWKNLPRKIKKKAVTVPQQDNEYDCGVFVLYYMRRF
Sbjct: 375 RFLKEEWNYLNKTGSLEDCHLHESVWKNLPRKIKKKAVTVPQQDNEYDCGVFVLYYMRRF 434
Query: 435 IEEAPERLNNKDSSNMFGEGWFQREEASALRKEMQALLLRLFEEAKDNNHMRDPTTPVSA 494
IEEAPERLNNKDSSNMFGEGWFQREEASALRKEMQALLLRLFEEAKDNNHMRDPTTPVSA
Sbjct: 435 IEEAPERLNNKDSSNMFGEGWFQREEASALRKEMQALLLRLFEEAKDNNHMRDPTTPVSA 494
Query: 495 TAEHPVEVLSTEPAVPDHPRNAVGVATS 522
TAEHPVEVLSTEPAVPDHPRNAVGVATS
Sbjct: 495 TAEHPVEVLSTEPAVPDHPRNAVGVATS 522
>AK064546
Length = 312
Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 125/286 (43%), Positives = 173/286 (60%), Gaps = 11/286 (3%)
Query: 199 RSRKVVEEVVLLDGDTCISDSAEKTSSA--CDAMKIHYPSWDTPNSIELSYSDMKCXXXX 256
+ R ++VVLLD + + A D KI+YPS + EL SD++C
Sbjct: 2 KERNKKKDVVLLDDEDMEPAKSINVEMAHKWDESKIYYPSRTDLETFELICSDIECLEPE 61
Query: 257 XXXXXXILNFYIMYLMGQMPSTSRLGGKYHIFNTYFFSKLEALTSKV--DNDAYFLNLRR 314
++NFY+ YL SR G +IFNTYF+SKLE + S++ +D+ F LRR
Sbjct: 62 EYLKSPVINFYMQYL-----RKSRTCGDLYIFNTYFYSKLEEVLSRMGDHDDSQFSKLRR 116
Query: 315 WWKGVDIFKKAYIIIPVHADAHWSLVIICMPAKEDQSGPTIFHLDSLKFHSSRFIFSTVE 374
WWK +DIF++ YII+P+H + HWSL+IICMPAKE +SGP I HLDSL HSSR +F +E
Sbjct: 117 WWKHIDIFRQPYIILPIHGEMHWSLIIICMPAKETESGPIILHLDSLGLHSSREVFYVIE 176
Query: 375 RFLKEEWNYLNKTGSLEDCHLHESVWKNLPRKIKKKAVTVPQQDNEYDCGVFVLYYMRRF 434
FL EW +L S +W +L + I K+ V VP Q N+YDCG+F+L+Y+ RF
Sbjct: 177 SFLIAEWQHLQNDSSYT-IPFSGRIWNHLSKNINKEKVQVPSQRNKYDCGIFMLHYIERF 235
Query: 435 IEEAPERLNNKDSSNMFGEGWFQREEASALRKEMQALLLRLFEEAK 480
I+EAPERL +++ MFG WF +E S LR ++AL+ FE A+
Sbjct: 236 IQEAPERL-TRENLCMFGRKWFDPKETSGLRDRIRALMFDAFESAR 280
>Os05g0207900 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
Length = 991
Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 137/262 (52%), Gaps = 29/262 (11%)
Query: 234 YPSWDTPNSIELSYSDMKCXXXXXXXXXXILNFYIMYLMGQMPSTSRLGGKYHIFNTYFF 293
YP D +++ +S D++ I++FY+ +L ++ + +YH FN++FF
Sbjct: 290 YPKGDH-DAVSISKRDVELLLPETFVNDTIIDFYVKHLSTRIEPAEK--HRYHFFNSFFF 346
Query: 294 SKLEALTS----KVDNDAYFLNLRRWWKGVDIFKKAYIIIPVHADAHWSLVIICMPAKED 349
KL L + A FL +R+W + ++IF K ++ IPV+ + HWSL++IC P + +
Sbjct: 347 RKLADLDKDQGRAPEGRAAFLRVRKWTRKINIFTKEFLFIPVNFNLHWSLIVICYPGEVE 406
Query: 350 --QSG--------PTIFHLDSLKFHSSRFIFSTVERFLKEEWNYLNKTGSLEDCHLHESV 399
+ G P I H+DSLK S + ++ +L EEW + S DC
Sbjct: 407 TFKDGDTNISAKIPCILHMDSLK-GSHSGLKDIIQSYLWEEWKERHPE-SASDC---SDK 461
Query: 400 WKNLPRKIKKKAVTVPQQDNEYDCGVFVLYYMRRFIEEAPERLN--NKDS-SNMFGEGWF 456
+ NL R I ++ +PQQDN +DCG+F+L+Y+ F+ + P N DS +N + WF
Sbjct: 462 FLNL-RFI---SLELPQQDNSFDCGLFLLHYVELFLMDTPRSFNPLKIDSFANYLSDDWF 517
Query: 457 QREEASALRKEMQALLLRLFEE 478
EAS R ++ L+ +L +E
Sbjct: 518 PPAEASLKRSLIRKLIHKLLKE 539
>Os01g0738100 Peptidase C48, SUMO/Sentrin/Ubl1 family protein
Length = 166
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 2/105 (1%)
Query: 376 FLKEEWNYLNKTGSLEDCHLHESVWKNLPRKIKKKAVTVPQQDNEYDCGVFVLYYMRRFI 435
FL EW +L S +W +L + I K+ V VP Q N+YDCG+F+L+Y+ RFI
Sbjct: 32 FLIAEWQHLQNDSSYT-IPFSGRIWNHLSKNINKEKVQVPSQRNKYDCGIFMLHYIERFI 90
Query: 436 EEAPERLNNKDSSNMFGEGWFQREEASALRKEMQALLLRLFEEAK 480
+EAPERL +++ MFG WF +E S LR ++AL+ FE A+
Sbjct: 91 QEAPERL-TRENLCMFGRKWFDPKETSGLRDRIRALMFDAFESAR 134
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,146,284
Number of extensions: 719346
Number of successful extensions: 1943
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1937
Number of HSP's successfully gapped: 4
Length of query: 522
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 417
Effective length of database: 11,553,331
Effective search space: 4817739027
Effective search space used: 4817739027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)