BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0472000 Os06g0472000|AK063588
(212 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0472000 Mss4-like domain containing protein 289 1e-78
Os03g0360700 Similar to Protein-methionine-S-oxide reductas... 107 6e-24
Os05g0404200 Mss4-like domain containing protein 104 5e-23
>Os06g0472000 Mss4-like domain containing protein
Length = 212
Score = 289 bits (739), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 80 KPNYSTSLTDEEWRKRLTKDQYYITRQKGTERAFTGEYWNTKTPGIYHCVCCDTPLFESS 139
KPNYSTSLTDEEWRKRLTKDQYYITRQKGTERAFTGEYWNTKTPGIYHCVCCDTPLFESS
Sbjct: 80 KPNYSTSLTDEEWRKRLTKDQYYITRQKGTERAFTGEYWNTKTPGIYHCVCCDTPLFESS 139
Query: 140 TKFDSGTGWPSYYQPIGDNVKCKLDMSIIFMPRTEVLCAVCDAHLGHVFDDGPRPTGKRY 199
TKFDSGTGWPSYYQPIGDNVKCKLDMSIIFMPRTEVLCAVCDAHLGHVFDDGPRPTGKRY
Sbjct: 140 TKFDSGTGWPSYYQPIGDNVKCKLDMSIIFMPRTEVLCAVCDAHLGHVFDDGPRPTGKRY 199
Query: 200 CINSASLKLKKTQ 212
CINSASLKLKKTQ
Sbjct: 200 CINSASLKLKKTQ 212
>Os03g0360700 Similar to Protein-methionine-S-oxide reductase, PilB family
Length = 136
Score = 107 bits (267), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 88 TDEEWRKRLTKDQYYITRQKGTERAFTGEYWNTKTPGIYHCVCCDTPLFESSTKFDSGTG 147
+DEEWR L+ +Q+ I R KGTE TGEY G+Y+C C TPL++S+TKFDSG G
Sbjct: 13 SDEEWRAVLSPEQFRILRLKGTELPGTGEYNKFYGDGVYNCAGCGTPLYKSTTKFDSGCG 72
Query: 148 WPSYYQPIGDNVKCKLDMSIIFMPRTEVLCAVCDAHLGHVF--DDGPRPTGKRYCINSAS 205
WP++++ + + D R E+ CA C HLGHVF + PT +R+C+NS S
Sbjct: 73 WPAFFEGLPGAINRTPDPD---GRRVEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVS 129
Query: 206 LKL 208
+K
Sbjct: 130 IKF 132
>Os05g0404200 Mss4-like domain containing protein
Length = 229
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 88 TDEEWRKRLTKDQYYITRQKGTERAFTGEYWNTKTPGIYHCVCCDTPLFESSTKFDSGTG 147
++EEW L+ +Q+ I R KGTE TGEY G+Y C C TPL++SSTKF+SG G
Sbjct: 101 SEEEWEAILSPEQFRILRLKGTEYPGTGEYDKLFAEGVYECAGCGTPLYKSSTKFNSGCG 160
Query: 148 WPSYYQPIGDNVKCKLDMSIIFMPRTEVLCAVCDAHLGHVF--DDGPRPTGKRYCINSAS 205
WP++Y+ + D R E+ CA C HLGHVF + PT +R+C+NS S
Sbjct: 161 WPAFYEGFPGAIARTPDPD---GRRIEITCAACGGHLGHVFKGEGFNTPTDERHCVNSIS 217
Query: 206 LKL 208
LK
Sbjct: 218 LKF 220
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,167,836
Number of extensions: 209821
Number of successful extensions: 290
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 286
Number of HSP's successfully gapped: 3
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)