Os03g0360700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein-methionine-S-oxide reductase, PilB family.
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Os03g0360700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein-methionine-S-oxide reductase, PilB family.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.44 | 0.259 | 13.2 | -0.793 | 0.518 | -0.854 | -0.28 | -1.15 | -0.339 | 17.3 | 20.23 | 1417 | -- | -- |
| 32.57 | 0.266 | 13.2 | -0.603 | 0.525 | -0.668 | -0.226 | -- | -0.295 | 17.1 | 20.6 | 1570 | -- | -- |
| 30.61 | 0.258 | 13.2 | -0.789 | 0.515 | -0.845 | -- | -1.12 | -0.338 | 17.2 | 20.32 | 1420 | -- | -- |
| 32.68 | 0.266 | 13.2 | -0.599 | 0.524 | -0.674 | -- | -- | -0.294 | 17 | 20.6 | 1570 | -- | -- |
| 44.44 | 0.31 | 13.2 | -0.793 | -- | -0.864 | -- | -1.06 | -0.339 | -- | 20.3 | 1370 | -- | -- |
| 42.24 | 0.305 | 13.2 | -0.879 | 0.534 | -- | -0.316 | -- | -0.445 | 17.2 | -- | -- | -- | -- |
| 42.47 | 0.305 | 13.2 | -0.879 | 0.531 | -- | -- | -- | -0.447 | 17 | -- | -- | -- | -- |
| 46.39 | 0.317 | 13.1 | -0.611 | -- | -0.692 | -- | -- | -0.302 | -- | 20.51 | 1353 | -- | -- |
| 40.34 | 0.296 | 13.2 | -- | 0.519 | -0.814 | -- | -- | -0.267 | 16.6 | 20.1 | 3222 | -- | -- |
| 57.27 | 0.354 | 13.2 | -0.898 | -- | -- | -- | -- | -0.46 | -- | -- | -- | -- | -- |
| 62.84 | 0.371 | 13.2 | -- | 0.547 | -- | -- | -- | -0.349 | 17 | -- | -- | -- | -- |
| 52.9 | 0.339 | 13.1 | -- | -- | -0.887 | -- | -- | -0.163 | -- | 20 | 2723 | -- | -- |
| 78.56 | 0.414 | 13.2 | -- | -- | -- | -- | -- | -0.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.30 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 13 |
| 2 | 30.31 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 21 | 30.39 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 23 | 30.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 60 | 30.45 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 204 | 30.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 249 | 30.64 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 309 | 30.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 311 | 30.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 341 | 30.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 345 | 30.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 353 | 30.74 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 5 |
| 373 | 30.76 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 388 | 30.77 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 402 | 30.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 409 | 30.83 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 440 | 30.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 497 | 31.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 535 | 31.23 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 690 | 31.93 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 11 |
| 713 | 32.04 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 761 | 32.35 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 762 | 32.36 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 772 | 32.41 | wind | 3 | 14400 | < th | dose dependent | sin | 10 | NA |
| 773 | 32.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 779 | 32.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 792 | 32.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 818 | 32.52 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 852 | 32.56 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 854 | 32.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 866 | 32.58 | wind | 3 | 14400 | < th | dose dependent | rect. | 20 | 16 |
| 877 | 32.61 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 939 | 32.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 12 |
| 940 | 32.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 15 |
| 941 | 32.71 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |