BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0360700 Os03g0360700|AK068764
(136 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0360700 Similar to Protein-methionine-S-oxide reductas... 283 4e-77
Os05g0404200 Mss4-like domain containing protein 236 3e-63
Os06g0472000 Mss4-like domain containing protein 107 2e-24
>Os03g0360700 Similar to Protein-methionine-S-oxide reductase, PilB family
Length = 136
Score = 283 bits (723), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 136/136 (100%), Positives = 136/136 (100%)
Query: 1 MASSGDSSGKQRSDEEWRAVLSPEQFRILRLKGTELPGTGEYNKFYGDGVYNCAGCGTPL 60
MASSGDSSGKQRSDEEWRAVLSPEQFRILRLKGTELPGTGEYNKFYGDGVYNCAGCGTPL
Sbjct: 1 MASSGDSSGKQRSDEEWRAVLSPEQFRILRLKGTELPGTGEYNKFYGDGVYNCAGCGTPL 60
Query: 61 YKSTTKFDSGCGWPAFFEGLPGAINRTPDPDGRRVEITCAACGGHLGHVFKGEGFKTPTD 120
YKSTTKFDSGCGWPAFFEGLPGAINRTPDPDGRRVEITCAACGGHLGHVFKGEGFKTPTD
Sbjct: 61 YKSTTKFDSGCGWPAFFEGLPGAINRTPDPDGRRVEITCAACGGHLGHVFKGEGFKTPTD 120
Query: 121 ERHCVNSVSIKFTPAS 136
ERHCVNSVSIKFTPAS
Sbjct: 121 ERHCVNSVSIKFTPAS 136
>Os05g0404200 Mss4-like domain containing protein
Length = 229
Score = 236 bits (602), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 105/126 (83%), Positives = 117/126 (92%)
Query: 11 QRSDEEWRAVLSPEQFRILRLKGTELPGTGEYNKFYGDGVYNCAGCGTPLYKSTTKFDSG 70
Q+S+EEW A+LSPEQFRILRLKGTE PGTGEY+K + +GVY CAGCGTPLYKS+TKF+SG
Sbjct: 99 QKSEEEWEAILSPEQFRILRLKGTEYPGTGEYDKLFAEGVYECAGCGTPLYKSSTKFNSG 158
Query: 71 CGWPAFFEGLPGAINRTPDPDGRRVEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVSI 130
CGWPAF+EG PGAI RTPDPDGRR+EITCAACGGHLGHVFKGEGF TPTDERHCVNS+S+
Sbjct: 159 CGWPAFYEGFPGAIARTPDPDGRRIEITCAACGGHLGHVFKGEGFNTPTDERHCVNSISL 218
Query: 131 KFTPAS 136
KF PAS
Sbjct: 219 KFIPAS 224
>Os06g0472000 Mss4-like domain containing protein
Length = 212
Score = 107 bits (268), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 13 SDEEWRAVLSPEQFRILRLKGTELPGTGEYNKFYGDGVYNCAGCGTPLYKSTTKFDSGCG 72
+DEEWR L+ +Q+ I R KGTE TGEY G+Y+C C TPL++S+TKFDSG G
Sbjct: 88 TDEEWRKRLTKDQYYITRQKGTERAFTGEYWNTKTPGIYHCVCCDTPLFESSTKFDSGTG 147
Query: 73 WPAFFEGLPGAINRTPDPD---GRRVEITCAACGGHLGHVFKGEGFKTPTDERHCVNSVS 129
WP++++ + + D R E+ CA C HLGHVF + PT +R+C+NS S
Sbjct: 148 WPSYYQPIGDNVKCKLDMSIIFMPRTEVLCAVCDAHLGHVF--DDGPRPTGKRYCINSAS 205
Query: 130 IKF 132
+K
Sbjct: 206 LKL 208
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.138 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,174,063
Number of extensions: 303806
Number of successful extensions: 450
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 448
Number of HSP's successfully gapped: 3
Length of query: 136
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 46
Effective length of database: 12,336,541
Effective search space: 567480886
Effective search space used: 567480886
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 150 (62.4 bits)