BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0328800 Os06g0328800|AK101557
(521 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0328800 Protein of unknown function DUF23 family protein 905 0.0
Os02g0712500 Protein of unknown function DUF23 family protein 775 0.0
Os06g0624700 Protein of unknown function DUF23 family protein 631 0.0
>Os06g0328800 Protein of unknown function DUF23 family protein
Length = 521
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/521 (86%), Positives = 451/521 (86%)
Query: 1 MKPAGGRSKDXXXXXXXXXXXXXVTCFDVKSFVASLALLTLIMALWQLHPYQXXXXXXXX 60
MKPAGGRSKD VTCFDVKSFVASLALLTLIMALWQLHPYQ
Sbjct: 1 MKPAGGRSKDGGGGGAALLGGGGVTCFDVKSFVASLALLTLIMALWQLHPYQPLVLLPAA 60
Query: 61 XXXXXXXXXXXXXXXGIAVSFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRER 120
GIAVSFL QRER
Sbjct: 61 LSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTATVPTTTAAARVAATTRPTLPARQRER 120
Query: 121 DPNKRELRPYGTAAALFVQMGAYRGGPRTFAVVGLASKPAHVFSNPYFKCEWLPNAPAGA 180
DPNKRELRPYGTAAALFVQMGAYRGGPRTFAVVGLASKPAHVFSNPYFKCEWLPNAPAGA
Sbjct: 121 DPNKRELRPYGTAAALFVQMGAYRGGPRTFAVVGLASKPAHVFSNPYFKCEWLPNAPAGA 180
Query: 181 PPVRTKAYKMLPDWGYGRVYTVVVVNCTFPSNPNADNLGGKLLVHAYYSTASRRYERFVA 240
PPVRTKAYKMLPDWGYGRVYTVVVVNCTFPSNPNADNLGGKLLVHAYYSTASRRYERFVA
Sbjct: 181 PPVRTKAYKMLPDWGYGRVYTVVVVNCTFPSNPNADNLGGKLLVHAYYSTASRRYERFVA 240
Query: 241 LEEAPGSYDDARFRPPFAYDYLYCGSSLYGNLSSARMREWLAYHARFFGPRSHFVLHDAG 300
LEEAPGSYDDARFRPPFAYDYLYCGSSLYGNLSSARMREWLAYHARFFGPRSHFVLHDAG
Sbjct: 241 LEEAPGSYDDARFRPPFAYDYLYCGSSLYGNLSSARMREWLAYHARFFGPRSHFVLHDAG 300
Query: 301 GVTPEVRAVLDPWVSAGRVTVQDIRAQEDYDGYYYNQFLVVNDCLHRYRHAANWTFFFDV 360
GVTPEVRAVLDPWVSAGRVTVQDIRAQEDYDGYYYNQFLVVNDCLHRYRHAANWTFFFDV
Sbjct: 301 GVTPEVRAVLDPWVSAGRVTVQDIRAQEDYDGYYYNQFLVVNDCLHRYRHAANWTFFFDV 360
Query: 361 DEYIYLPDGRALEDVLAQLQPYTQFTIEQNPMSSKLCIDDPTEDYSREWGFEKLVFRNSI 420
DEYIYLPDGRALEDVLAQLQPYTQFTIEQNPMSSKLCIDDPTEDYSREWGFEKLVFRNSI
Sbjct: 361 DEYIYLPDGRALEDVLAQLQPYTQFTIEQNPMSSKLCIDDPTEDYSREWGFEKLVFRNSI 420
Query: 421 TGVRRDRKYAIQARNAYSTGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCRKFVP 480
TGVRRDRKYAIQARNAYSTGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCRKFVP
Sbjct: 421 TGVRRDRKYAIQARNAYSTGVHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCRKFVP 480
Query: 481 KPANGSKVMFEGIPYVYDDNMKRLAGEIRRFEKQTIGDVHT 521
KPANGSKVMFEGIPYVYDDNMKRLAGEIRRFEKQTIGDVHT
Sbjct: 481 KPANGSKVMFEGIPYVYDDNMKRLAGEIRRFEKQTIGDVHT 521
>Os02g0712500 Protein of unknown function DUF23 family protein
Length = 518
Score = 775 bits (2002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/501 (74%), Positives = 401/501 (80%), Gaps = 3/501 (0%)
Query: 24 VTCFDVKSFVASLALLTLIMALWQLHPYQXXXXXXXXXXXXXXXXXXXXXXXGIAVSFLX 83
V C D+KSFV SLA LT+ +ALWQL PY A +
Sbjct: 18 VPCVDIKSFVLSLAFLTVFVALWQLQPYGSLLTAARSTASVSASPCSLIATPAAAAASAG 77
Query: 84 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRERDPNKRELRPYGTAAALFVQMGAY 143
R DPNKRELRPYG+AAALFVQMGAY
Sbjct: 78 VIRSENSTADTAKTAPAAVASAVPARLARAARPARVEDPNKRELRPYGSAAALFVQMGAY 137
Query: 144 RGGPRTFAVVGLASKPAHVFSNPYFKCEWLPNAPAGAP---PVRTKAYKMLPDWGYGRVY 200
RGGPRTFA+VGLASKP HVFSNPYFKCEWLPN AG P PVRTKAYKMLPDWGYGRVY
Sbjct: 138 RGGPRTFAIVGLASKPTHVFSNPYFKCEWLPNPTAGNPSPRPVRTKAYKMLPDWGYGRVY 197
Query: 201 TVVVVNCTFPSNPNADNLGGKLLVHAYYSTASRRYERFVALEEAPGSYDDARFRPPFAYD 260
TVVVVNCTFPSNPNADN GGKLLVHAYYST SRRYERFVALEEAPGSYD++RF PPF YD
Sbjct: 198 TVVVVNCTFPSNPNADNAGGKLLVHAYYSTTSRRYERFVALEEAPGSYDESRFSPPFPYD 257
Query: 261 YLYCGSSLYGNLSSARMREWLAYHARFFGPRSHFVLHDAGGVTPEVRAVLDPWVSAGRVT 320
YLYCGSSLYGNLS++RMREW+AYHA FFGPRSHFV HDAGG++PEV+AVLDPWV AGR+T
Sbjct: 258 YLYCGSSLYGNLSASRMREWVAYHAHFFGPRSHFVFHDAGGISPEVKAVLDPWVRAGRLT 317
Query: 321 VQDIRAQEDYDGYYYNQFLVVNDCLHRYRHAANWTFFFDVDEYIYLPDGRALEDVLAQLQ 380
VQDIRAQ +YDGYYYNQFLVVNDCLHRYRHAANWTFFFDVDEYIYLP+G+ L+ VL +L
Sbjct: 318 VQDIRAQAEYDGYYYNQFLVVNDCLHRYRHAANWTFFFDVDEYIYLPNGQTLDQVLGKLS 377
Query: 381 PYTQFTIEQNPMSSKLCIDDPTEDYSREWGFEKLVFRNSITGVRRDRKYAIQARNAYSTG 440
Y+QFTIEQNPMSSKLC+ DP++DYSREWGFEKLVFRNSIT VRRDRKYAIQARNAYS G
Sbjct: 378 GYSQFTIEQNPMSSKLCVQDPSKDYSREWGFEKLVFRNSITKVRRDRKYAIQARNAYSAG 437
Query: 441 VHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCRKFVPKPANGSKVMFEGIPYVYDDN 500
VHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCR+FVP P NGSK+MFEGIPYVYDDN
Sbjct: 438 VHMSQNVYGRTTHKTESLIRYYHYHNSINVMGEPCREFVPVPVNGSKLMFEGIPYVYDDN 497
Query: 501 MKRLAGEIRRFEKQTIGDVHT 521
MKRLAG+I+RFEK+ IG HT
Sbjct: 498 MKRLAGQIKRFEKEAIGSAHT 518
>Os06g0624700 Protein of unknown function DUF23 family protein
Length = 489
Score = 631 bits (1627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/408 (73%), Positives = 339/408 (83%), Gaps = 9/408 (2%)
Query: 121 DPNKRELRPYGTAAALFVQMGAYRGGPRTFAVVGLASKPAHVFSNPYFKCEWLPNAPAGA 180
DPN+RE R G+AAALFVQMGAYRGGP TFAV+GLASKP HV+ P+F+CEW+PNA A
Sbjct: 80 DPNRREFRAVGSAAALFVQMGAYRGGPYTFAVIGLASKPTHVYGKPWFRCEWVPNANGSA 139
Query: 181 PPVRT------KAYKMLPDWGYGRVYTVVVVNCTFPSNPNADNLGGKLLVHAYYSTASRR 234
Y MLPDWGYGRVYTVVVVNCTF PNADN GGKL+++AYY + R
Sbjct: 140 AAAAARPMRAANTYHMLPDWGYGRVYTVVVVNCTFARVPNADNAGGKLVLNAYYGASPAR 199
Query: 235 YERFVALEEAPGSYDDARFRPPFAYDYLYCGSSLYGNLSSARMREWLAYHARFFGPRSHF 294
YER VA+EEAPG+YD A FRPP YDYLYCGSSLYGNLS+AR+REW+AYHARFFG RSHF
Sbjct: 200 YERIVAMEEAPGAYDAAEFRPPHRYDYLYCGSSLYGNLSAARVREWMAYHARFFGLRSHF 259
Query: 295 VLHDAGGVTPEVRAVLDPWVSAGRVTVQDIRAQEDYDGYYYNQFLVVNDCLHRYRHAANW 354
V HDAGGV+P VRA L+PWV AGR T+QD+RAQ +YDG+YYNQFLVVNDCLHRYRHAA W
Sbjct: 260 VFHDAGGVSPAVRAALEPWVRAGRATLQDVRAQAEYDGWYYNQFLVVNDCLHRYRHAARW 319
Query: 355 TFFFDVDEYIYLPDGRALEDVLAQLQPYTQFTIEQNPMSSKLCI---DDPTEDYSREWGF 411
TFFFDVDEYI+LPDGR+LE VLA+L+PYTQFTIEQNPMSS+LC D+P DYS EWGF
Sbjct: 320 TFFFDVDEYIFLPDGRSLEAVLAELEPYTQFTIEQNPMSSRLCARNPDEPETDYSNEWGF 379
Query: 412 EKLVFRNSITGVRRDRKYAIQARNAYSTGVHMSQNVYGRTTHKTESLIRYYHYHNSINVM 471
EKLVFRNSITGVRRDRKYAIQA+NAY+TGVHMS+NV G TTHKTE LIRYYHYHN+INV+
Sbjct: 380 EKLVFRNSITGVRRDRKYAIQAKNAYATGVHMSENVIGNTTHKTEHLIRYYHYHNTINVI 439
Query: 472 GEPCRKFVPKPANGSKVMFEGIPYVYDDNMKRLAGEIRRFEKQTIGDV 519
GE CR+FVP P NG + E P+ YDD+MKR+A +R FE++TIGDV
Sbjct: 440 GEVCREFVPIPPNGGLIWSEKTPWYYDDSMKRIADTVREFERKTIGDV 487
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,915,205
Number of extensions: 715533
Number of successful extensions: 1393
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1389
Number of HSP's successfully gapped: 3
Length of query: 521
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 416
Effective length of database: 11,553,331
Effective search space: 4806185696
Effective search space used: 4806185696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)